Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001671315.1_202016-06- 20] 17 sequences; 12,125,002 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq12 131 1e-25 seq9 102 7e-17 seq11 89.7 4e-13 >seq12 Length=1077585 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || || || || ||||| ||||| || |||||| ||| ||| || Sbjct 498695 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 498754 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | | || ||||| || ||| ||||| || || | || || Sbjct 498755 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 498814 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||| | |||||||| || || |||||||||||| || |||| || |||| || Sbjct 498815 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 498874 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||| ||||||||||| ||| |||| || ||||| |||| || Sbjct 498875 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 498924 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || || || || ||| || ||| |||| Sbjct 64502 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 64443 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| |||||| ||||| || || | || ||||||| Sbjct 64442 GACACTATTGACAACGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 64383 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || || ||| ||||||| || ||| || | ||||||||| Sbjct 64382 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 64323 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| ||||| |||| |||| || ||||| |||| || || Sbjct 64322 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTAT 64273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || ||||||||||| || || ||| | || Sbjct 64730 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 64671 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||| |||||| ||||| || || | || ||||||| Sbjct 64670 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 64611 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || || | ||||| || ||| || | || || ||| Sbjct 64610 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 64551 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||||||||| ||| |||| || ||||| |||| || || Sbjct 64550 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTAT 64501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || || || || ||| || ||| |||| Sbjct 64274 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 64215 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | |||| || || || ||||| || | || |||||| Sbjct 64214 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 64155 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| || || ||| | |||||| || ||| || | || || ||| Sbjct 64154 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 64095 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||||||||| ||| |||| || ||||| |||| || || Sbjct 64094 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTAT 64045 >seq9 Length=436890 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622 ||||| || || || || ||||| ||||| || ||| ||| |||| || || | Sbjct 66808 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 66867 Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682 | | || ||||| ||| || ||||| || || | || || ||||| ||| | Sbjct 66868 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 66927 Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| || || ||||||||||| || ||| || | || || |||||||||||| Sbjct 66928 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 66987 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||| ||| ||||| | || || ||||| |||| || || || Sbjct 66988 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTATCAT 67031 >seq11 Length=665834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622 || || || || || || ||||| ||||| || ||| ||| |||| || || | Sbjct 617548 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 617489 Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682 | | || ||||| || ||| ||||| || || | || || ||||| ||| | Sbjct 617488 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 617429 Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| || || ||||||||||| || |||| | | || || ||||| ||||| Sbjct 617428 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 617369 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||| ||| | || |||| || |||||| |||| || || || Sbjct 617368 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTATCAT 617325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404711861443