Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001671405.1_202016-06- 20] 17 sequences; 12,099,180 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12 199 9e-46 seq9 158 3e-33 seq11 150 4e-31 >seq12 Length=1077329 Score = 199 bits (220), Expect = 9e-46 Identities = 173/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| |||||||||||||||||||| |||||||||||||| || | || ||||| ||| Sbjct 63563 CTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCA 63622 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| || |||||||| || || || | || ||| |||||||||||||| ||||| ||| Sbjct 63623 TCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTG 63682 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 ||||||||||| ||| ||||| ||||| ||||| ||| ||| || || ||||| | Sbjct 63683 TCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATA 63742 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||||| || || || || | |||||| Sbjct 63743 GTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 63777 Score = 179 bits (198), Expect = 8e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || | || |||||||| ||||| || ||||| | || || Sbjct 64012 TCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGACAGCGT 64071 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| || |||||||| || || || | || |||||| ||||||||||| || Sbjct 64072 TCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGAATACC 64131 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||||||| ||||||||| ||||| ||||| ||| ||| || || || Sbjct 64132 TTCCTTGTCTTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAG 64191 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| ||||| | |||||| ||||| | |||||| Sbjct 64192 GGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64233 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||||| || | |||||||| || ||||| |||||||| | || || Sbjct 64468 TCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGT 64527 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| ||||||||||| || ||||| | | |||||| |||||||| || || Sbjct 64528 TCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAANCTTTGTTGATCTGGAGGGATACC 64587 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||||||||| ||| ||||| || ||||| || ||| ||| ||||| | Sbjct 64588 TTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAA 64647 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || |||||||| || ||||| | ||||| Sbjct 64648 TGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 64689 Score = 134 bits (148), Expect = 3e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| | |||||| || | ||||||||| || || ||||| || ||||| || | |||| | Sbjct 64240 TCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAG-G 64298 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| ||||||||||| || ||||| | | ||||| |||||||| || | Sbjct 64299 TTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATAC 64358 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||| || ||||| ||| ||||| || || ||||| || ||| || || | Sbjct 64359 CTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTA 64418 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || |||||||| || || || | ||||| Sbjct 64419 AAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 64461 >seq9 Length=437944 Score = 158 bits (174), Expect = 3e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| | |||||| || | ||| | |||||| ||||||||||| ||||| || | |||| | Sbjct 67946 TCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAG-G 67888 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| | |||||||| || ||||| | || ||||||||| || || || | Sbjct 67887 TTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATAC 67828 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||||||||| ||| |||||| || ||||| ||||| ||| ||| ||||| | Sbjct 67827 CTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCA 67768 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || | ||||| || |||||||| || || || Sbjct 67767 AAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 67734 >seq11 Length=659337 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || | |||||| || ||||| || ||||| || | ||||| Sbjct 617460 TCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAGAGT 617519 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| || ||||| | || ||||||||| || || || || Sbjct 617520 TCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACC 617579 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||| || ||||||||||| ||| ||| ||||| | Sbjct 617580 TTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAA 617639 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || | ||||| || |||||||| || ||||| Sbjct 617640 AGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 617672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481358341039