Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001671715.1_202016-06- 20] 17 sequences; 12,121,325 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 150 3e-31 seq9 114 2e-20 seq15 113 7e-20 >seq12 Length=1077778 Score = 150 bits (166), Expect = 3e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| ||||| || |||||||| ||||| ||||| | | Sbjct 64710 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 64651 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || |||||||||||| || |||||||| || || |||||| Sbjct 64650 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 64591 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || ||| | || || || |||| | |||||||| Sbjct 64590 CAAAGATTGATNTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 64531 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||| || || ||||||||||| || | || |||||||||| ||| || Sbjct 64530 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 64473 Score = 138 bits (152), Expect = 2e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||||||| || |||||||| ||||| ||||| | Sbjct 64482 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 64423 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| || |||||||||||||||||||| || || |||||| Sbjct 64422 GACACTATTGACAACGTCAAAAGTAANATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 64363 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || || ||| |||| ||| || |||| || || || || Sbjct 64362 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 64303 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||| | || ||||| || | || |||||||||| ||| || Sbjct 64302 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 64245 Score = 127 bits (140), Expect = 3e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| ||||| || |||||||| ||||| ||||| | | Sbjct 64254 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 64195 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || |||||||||||| || |||||||| || || || || Sbjct 64194 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 64135 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || || ||| |||| ||| || |||| | || || ||| Sbjct 64134 CAAAGATTGATTTTTGCCGGTAANCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 64075 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 |||||||| || || ||| | || | || || | || | ||||||| Sbjct 64074 ATTCAAAAGGAGTCCACTCTTCACCTNGTCTTGAGGTTGAGGGGTGGTA 64026 Score = 87.8 bits (96), Expect = 3e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| ||||| | || ||||| | Sbjct 65166 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 65107 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || |||||||||||| || |||||||| || || |||||| Sbjct 65106 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 65047 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || || |||| || | |||| | ||||| || Sbjct 65046 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGNAGAACGCTGTCTGATTACAAC 64987 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || || ||| | || || | || |||||||||| Sbjct 64986 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTAT 64937 >seq9 Length=433234 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| | || || || || || ||| | || ||||| | ||| || ||| Sbjct 63071 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 63130 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || |||||||| || |||||||| |||||||| |||||||| | Sbjct 63131 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 63190 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || ||||| || || ||||| || || || |||| || || || || ||||||||| Sbjct 63191 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 63250 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || || || | || |||||||||| Sbjct 63251 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 63291 >seq15 Length=1079290 Score = 113 bits (124), Expect = 7e-20 Identities = 359/556 (65%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 205318 CtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCA 205377 ||||| || |||| ||| || ||||| |||| | | | ||||| ||| || || Sbjct 455345 CTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGTGATTTGTTCTTTCAAGGCA 455404 Query 205378 TTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTT 205437 | ||| || | ||| | |||||||| || | | ||||||| || ||| ||| | Sbjct 455405 TCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCC 455464 Query 205438 AAATTAGTTAAATGT-GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGG 205496 | | | || | | |||||||| |||||| ||| ||| |||| |||||||| Sbjct 455465 ATGTC-GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAATGG 455523 Query 205497 TACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAG------------ 205544 ||| || || ||||||||| || | ||| |||| | |||| ||| Sbjct 455524 TACTCCCAACCCCATATCACAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACC 455583 Query 205545 --ATATTTATTATTAATT----------ACATGAAATTGTACAAAACAATGACAAGGTGG 205592 || || | || || |||| || ||| |||| ||| || || || Sbjct 455584 GGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGCGG 455643 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | | |||| || |||| ||| || |||||||| | | || || ||||| | Sbjct 455644 CAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTA 455703 Query 205653 AGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATA 205712 || || | |||| ||||| |||| ||| | |||||||||| ||||| ||||| Sbjct 455704 GGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATA 455763 Query 205713 ATTTGTATC-CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771 | ||| || || | ||||||||||||||||| | ||||||||| |||||||| | Sbjct 455764 GTCGTCATCGCACGTCT-TGTATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGG 455822 Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATC 205831 | || | ||| ||| |||| ||||| || || || || | || ||||| |||| Sbjct 455823 GCCCCAGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATC 455882 Query 205832 CATTTTCATCCCAAAT 205847 |||| | |||||||| Sbjct 455883 CATTACCGTCCCAAAT 455898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455839465600