Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001671805.1_202016-06- 20] 17 sequences; 12,111,380 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 seq9 95.1 1e-14 >seq12 Length=1077771 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || ||||| |||| ||| ||| ||||||||||| || || | Sbjct 64490 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 64549 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||||||| || ||||| || ||||| | ||||| || ||||| Sbjct 64550 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 64609 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| |||||| ||| || | | |||| | || ||| Sbjct 64610 ATACCTTCCTTGTCTTGAATTTTAGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 64669 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || ||||| || || || |||||||| Sbjct 64670 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64716 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| || || ||||| || ||||||||||| | Sbjct 64718 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 64777 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | |||| || || || || ||||| || ||||||| |||||| || |||| Sbjct 64778 AAGGTT--CTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 64835 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| ||||||||| ||||| |||||| | | |||| || | Sbjct 64836 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 64895 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| | || || || || || |||| |||||| |||||||| ||||| Sbjct 64896 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 64944 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| || || ||||| || |||||||||||| | Sbjct 499138 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 499079 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | | || |||| ||| || || || || ||||| | |||||||| || | Sbjct 499078 AAAGTT--CTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 499021 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| || || ||| || | | |||| | || | Sbjct 499020 GAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 498961 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 | |||| |||||| ||||| || || | |||||| || || |||||||| ||| || Sbjct 498960 CTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTGGCT 498905 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | |||| || | || | ||| |||||||||||||||||| || | Sbjct 64946 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 65005 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| || || || || ||||| || ||||| | ||||| || ||||| Sbjct 65006 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAANCTTTGTTGATCTGGAGGG 65065 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| |||||| |||||| | | | | || | || || Sbjct 65066 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 65125 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || |||| |||||| || || || ||||| Sbjct 65126 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 65172 >seq9 Length=430260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || || ||||||| ||| || || |||||||||||||| | Sbjct 61456 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 61397 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | |||| |||| ||| || || || || ||||| | |||||||| || | Sbjct 61396 AAGGTT--CTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 61339 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| ||| ||| ||| || | | |||| | || | Sbjct 61338 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 61279 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 | |||| || || ||||| || |||| |||||| ||||| Sbjct 61278 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 61239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075118145357