Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001671835.1_202016-06- 20] 17 sequences; 12,111,137 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq15 114 2e-20 >seq2 Length=811468 Score = 127 bits (140), Expect = 2e-24 Identities = 387/590 (66%), Gaps = 30/590 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||| || ||||| | ||| ||| ||| || ||||||||| || Sbjct 399517 AAGTTTGAAGATTTGGGTGTCGGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGA 399458 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 || ||||| | || ||||| | | ||| ||||| | || | ||| | Sbjct 399457 GCGTTTGCAAGTCGAATCTTTCCTCCTTCAGTTATAGAAAAACTGGGTATTTCTCATGTT 399398 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| | |||| | || ||||| ||| ||||| || ||||| || || ||| Sbjct 399397 AAAGGTTTGCTATTGTACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATT 399338 Query 164578 GCT-CAAGCTTTTAAATCGCGA-----CCCGTTAAAATTGTTAATGGTCCTGAATTATTG 164631 | | ||| | | ||| || | ||| ||||| || |||||||| ||| | ||| Sbjct 399337 GGTACAA--TGCTGAAT-GCNAAAGAGCCC---AAAATCGTCAATGGTCCAGAAATTTTG 399284 Query 164632 AACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAA 164691 | || || || ||| ||||||| || || | || || ||| |||| || |||| | Sbjct 399283 AGTAAGTACGTTGGTTCTTCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCA 399224 Query 164692 GAACAAAAGAAAGC--AGGTTTAGCTAG-TAAATTACATGTTATTGTTTTTGATGAGATA 164748 ||| | | | || ||| | || | | |||||| ||||| |||| |||||| | Sbjct 399223 GAATATAGG---GCCAAGGGTGAGGAATCTTCCTTACATATTATTATTTTCGATGAGCTG 399167 Query 164749 GATGCTCTTTGCAAAAAACGTGGT------GATAATATTATTCATGATG----CAGTG-- 164796 ||| || ||| ||| | | ||| | | || || | || | || || Sbjct 399166 GATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTA 399107 Query 164797 GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTA 164856 |||||||| ||| | ||||||| |||||||| || || ||||||||||| || | Sbjct 399106 GTTAATCAATTGTTAGCTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATT 399047 Query 164857 GGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAA 164916 ||||||||||| || |||||||| || |||| | || || || ||| |||| ||| Sbjct 399046 GGTATGACCAATCGTAAAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAA 398987 Query 164917 TTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 | || | ||||| |||||||| || ||||| | || |||||||| Sbjct 398986 GTCCAAGTTGAAATTCATTTACCCGATGAAAAAGGAAGACTCCAAATTTT 398937 >seq15 Length=1079621 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 19341 TAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAG 19400 ||||| || | || || ||| |||| ||||| || ||||||||| | | |||||| | Sbjct 602665 TAAGAACTACAAAGATTCCTCAAATTGGTGACAAATTTGCTTCTCGTCACGGTCAAAAGG 602606 Query 19401 GCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGC 19460 | || |||||| | |||||| |||||||||||| ||||| ||| ||||| || | Sbjct 602605 GTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACCGCAGAAGGTATTGTTC 602546 Query 19461 CGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||| | ||||||||||| |||||| ||||| ||| ||||| Sbjct 602545 CAGATTTGATTATTAACCCTCATGCTATTCCATCTCGTATGAC 602503 Score = 104 bits (114), Expect = 3e-17 Identities = 367/571 (64%), Gaps = 43/571 (8%) Strand=Plus/Plus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAAT-TAT 6757 ||||||||||||||||||| | |||||| ||| || || |||||| | ||| | | Sbjct 455598 TGGATGAGGATTATAATCTTCAATTTCAAAGTCTGTTAACTTGAAATCA--TCAATGTCT 455655 Query 6758 CAGACtttttttttAATATTACAACAGGTGAA-GGTTTT--ATTGATCGAGTTAATTGTT 6814 || | ||||||| || | ||| ||| || ||| || || | ||||| Sbjct 455656 TTAACGTCCCTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATT--TCTGGTGATTTGTT 455713 Query 6815 CTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATT 6874 |||| | || | || || ||| ||||| ||| ||||| || | |||||||| || | Sbjct 455714 CTTTCAAGGCATCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACT 455773 Query 6875 CACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 ||||||| | ||| || ||| ||| |||||| | || || || ||||| || || | Sbjct 455774 CACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAA 455833 Query 6935 CATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAG-ATAAA 6993 ||||| ||||| || || |||||||| || | ||| || || ||| || || Sbjct 455834 TGTTAAATGGTACTCCCAACCCCATATCACAAGAACGTTGGTACAAT----AAGCATGAA 455889 Query 6994 A---------TATTG------------TCTATAG---------CATAAAATTGACACAAT 7023 | || | ||| | | |||| || || | || Sbjct 455890 AGGCGGGGCTTACCGGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAA 455949 Query 7024 ACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAA 7083 | ||| ||||| || ||| | | || | ||||| ||| ||||| ||| |||| | Sbjct 455950 ATATGGCATGGCGGCAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATG 456009 Query 7084 ATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATA 7143 || | |||||| | |||||||| |||| ||| |||| || |||||||| ||| Sbjct 456010 ATTCTTCTATCGTAGGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATA 456069 Query 7144 CCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGA 7203 || || || ||| | || || | | || ||||| |||||||| ||||||||| Sbjct 456070 CCTTGTCCAGTATAGTCGTCATCGCACGTCTTGTATTTAGCACCAAAATGCCTCCATTGA 456129 Query 7204 AACCCATAAATAGGACCTAAATCACCTTCTT 7234 || ||||||| || || | ||| ||| ||| Sbjct 456130 AATCCATAAACGGGCCCCAGATCTCCTACTT 456160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871873377200