Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001737415.2_202016-11- 09] 57 sequences; 11,871,177 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq12 152 4e-32 seq9 136 3e-27 seq11 123 2e-23 seq53 96.9 3e-15 >seq12 Length=1033972 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | || || || || || |||||||| ||||| || ||||| |||| Sbjct 483273 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 483214 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| |||||||||||||| ||||| ||||| | ||||| || || ||| Sbjct 483213 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 483154 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || ||| | || | ||||||||| | ||| ||| Sbjct 483153 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 483094 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || ||||||||||| || || || || ||||| Sbjct 483093 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 483047 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | || || | ||| | ||| || || || || || |||||||| | Sbjct 53604 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 53663 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||||| ||||| ||||| | |||||||| || ||| Sbjct 53664 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 53723 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| ||| || | || | |||||| || | ||| || Sbjct 53724 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 53783 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || || |||| |||||| || || || ||||| Sbjct 53784 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 53830 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || ||||| |||||||| || | | ||||| |||| || | |||| Sbjct 52923 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGC 52982 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | || || || || ||||| ||||| || ||||||||||| Sbjct 52983 TTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTC 53042 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||||||| | ||| || || || || | || || || || Sbjct 53043 GACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTC 53102 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 53103 AGTGTCTTGACAAAAATTTGCAT 53125 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | || || | ||| | ||| || || || || || |||||||| | Sbjct 54540 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 54599 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||||| ||||| ||||| | |||||||| || || Sbjct 54600 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 54659 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| || || | || | || || || | ||| ||| Sbjct 54660 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 54719 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||||| ||||| ||||| || || || |||||||| Sbjct 54720 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 54766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | || || | ||| | ||| || || || || || |||||||| | Sbjct 53355 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 53414 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||||| ||||| ||||| | |||||||| || ||| Sbjct 53415 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 53474 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| ||| || | || | |||||| || | ||| || Sbjct 53475 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 53534 Query 101423 TCAAGAGT 101430 || || || Sbjct 53535 TCTAGGGT 53542 >seq9 Length=437561 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | || ||||| || | || ||||||||||| || ||||| || | Sbjct 44728 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 44669 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || |||||||||||||| ||||| ||||| | ||||| || || || Sbjct 44668 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 44609 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| ||| || ||| | || | ||||||||| | ||| ||| Sbjct 44608 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 44549 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 || | ||||| || || || || ||||| || ||||| Sbjct 44548 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 44511 >seq11 Length=666521 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | || || ||||| | || ||||| ||||| || ||||| || | Sbjct 615177 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 615236 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || |||||||||||||| ||||| ||||| | ||||| || || || Sbjct 615237 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 615296 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || ||| | || | |||||||| | ||| ||| Sbjct 615297 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACT 615356 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 || | ||||| || || || || ||||| || || || Sbjct 615357 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 615394 >seq53 Length=323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | || || | ||| | ||| || || || || || |||||||| | Sbjct 203 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 144 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||||| ||||| ||||| | |||||||| || ||| Sbjct 143 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 84 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| ||| || | || | |||||| || | ||| || Sbjct 83 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 24 Query 101423 TCAAGAGT 101430 || || || Sbjct 23 TCTAGGGT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278124710349