Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001737505.2_202016-11- 09] 169 sequences; 12,104,055 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq12 102 6e-17 >seq12 Length=1056709 Score = 102 bits (112), Expect = 6e-17 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||||| || ||||| ||| || | || || ||| || Sbjct 56819 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 56760 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| ||||| ||||| |||||| |||| || | Sbjct 56759 GACACTATTGACAAC--GTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATC 56702 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACG----AACGCAGCTTGTCCGAT 27963 | ||| | || ||||||||||| || ||| |||| |||| ||||| |||| ||| Sbjct 56701 AACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGC----TGTCTGAT 56646 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || |||||| || ||||||||||| ||| | ||| | || || Sbjct 56645 TATAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 56593 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||||| || ||||| ||| || | || || ||| || Sbjct 56591 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 56532 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| ||||| ||||| |||||| |||| || | Sbjct 56531 GACACTATTGACAAC--GTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATC 56474 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACG----AACGCAGCTTGTCCGAT 27963 | ||| | || ||||||||||| || ||| |||| |||| ||||| |||| ||| Sbjct 56473 AACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGC----TGTCTGAT 56418 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || ||||| || |||||| || ||||||||||| Sbjct 56417 TATAACATTCAGAAAGAGTCTACGTTGCATTTGGT 56383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861667034663