Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001737545.2_202016-11- 09] 220 sequences; 12,326,525 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq12 149 5e-31 seq9 131 1e-25 seq11 109 4e-19 seq173 100 2e-16 >seq12 Length=1058210 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||||||| | ||| || ||||| |||||||||||||| | Sbjct 61186 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 61245 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || ||||| || || ||| | ||||||||||| ||||| || ||| Sbjct 61246 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 61305 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | ||| |||||| | || | |||||| ||| ||| || Sbjct 61306 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 61365 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || || |||| ||||| || || || ||||| Sbjct 61366 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 61412 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||| | || || | ||||| ||||| || |||||||| || || |||| Sbjct 60730 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 60789 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || ||||| || || ||| | |||||||||||||| || || ||| Sbjct 60790 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 60849 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| |||||| | || || | || | |||||||||| ||| || Sbjct 60850 ATACCTTCCTTGTCTTG-AATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAAC 60908 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || || || | || || ||||| || ||||| Sbjct 60909 CTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 60956 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || || || ||||| ||||| ||||| || || | Sbjct 494116 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 494057 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | ||| || |||||| | ||||||||||| || || || ||| Sbjct 494056 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 493997 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | || |||||| | || | |||||||||| ||| ||| Sbjct 493996 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 493937 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || ||||| || || ||||| || || || || || ||||| || Sbjct 493936 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 493887 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | ||| | ||||| || || |||||||| ||||| | | || | | || Sbjct 61657 AGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCT 61716 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || || ||| | ||||||||||| ||||| || || ||||| || |||||| Sbjct 61717 TCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCT 61776 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | || || | || | || || ||| ||| ||||| | ||||| || Sbjct 61777 TG-AATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGT 61835 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || || || || |||||||| Sbjct 61836 TTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 61868 >seq9 Length=428989 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || || || | |||||||||||||||||||| || || | Sbjct 58676 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 58617 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | || || | ||| || |||||| | ||||||||||| || || || || Sbjct 58616 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 58557 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| |||| |||||| | || | |||||||||| ||| || Sbjct 58556 ATACCTTCCTTGTCTTG-AATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 58498 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 ||| | ||| || || || ||||| || || || ||||| Sbjct 58497 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 58459 Score = 100 bits (110), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| | ||||||||||| || || || || ||||| || ||| Sbjct 58355 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 58296 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| |||| |||||| | || | |||||||||| ||| ||||| | ||| || Sbjct 58295 TCTTG-AATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 58237 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAA 29777 || || ||||| || || || ||||| Sbjct 58236 GGTCTTACCAGTCAAAGTCTTGACAAA 58210 >seq11 Length=671968 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || | || |||||||| | |||||||| ||||| ||||| || || | Sbjct 623846 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 623905 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || | ||| || |||||| | ||||||||||| || || || || Sbjct 623906 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 623965 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | || |||||| | || | ||||||||| ||| ||| Sbjct 623966 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACT 624025 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 || | ||| || || || ||||| || || ||||| || Sbjct 624026 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 624063 >seq173 Length=1270 Score = 100 bits (110), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| | ||||||||||| || || || || ||||| || ||| Sbjct 15 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 74 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| |||| |||||| | || | |||||||||| ||| ||||| | ||| || Sbjct 75 TCTTG-AATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 133 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAA 29777 || || ||||| || || || ||||| Sbjct 134 GGTCTTACCAGTCAAAGTCTTGACAAA 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218167131020