Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001737635.2_202016-11- 09] 200 sequences; 11,843,585 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 1e-14 seq9 89.7 5e-13 >seq12 Length=1008795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 |||||| || || || ||||| || || || ||||||||| | |||| | ||| || Sbjct 58915 AAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAAG 58856 Query 25319 CAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTC 25376 ||||| ||||||| ||||| |||| | | |||||||||||||| || ||||| ||| Sbjct 58855 CAACTAGAAGATGGTAGAACGCTGTCGG--ACTACAATATTCAAAAGGAGTCCACTCTTC 58798 Query 25377 ATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCATTC 25414 | | || || || ||||| || || || |||||| || Sbjct 58797 ACCTTGTCTTGAGGTTGAGGGGTGGTAACTGATCAGTC 58760 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| ||| | ||||| | || || ||| || | Sbjct 59290 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 59231 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||| || || || ||||| || || ||||| Sbjct 59230 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 59171 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || | || | | ||| || || || ||||| | ||||| |||| | | |||| Sbjct 59170 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTG--ACTACA 59113 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||| ||||| || |||| || ||||| ||||||||||| || Sbjct 59112 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 59064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || || || || |||||||| || | || || | ||||| ||| | Sbjct 456857 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATC 456916 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||||| || | || || || || || || || ||||| || || || Sbjct 456917 TTCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGA 456976 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||| | || | | || || ||| | ||||||| ||||| | | ||| || Sbjct 456977 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTA 457036 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| ||||| || | || || || || ||||||||||| || Sbjct 457037 CAACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 457087 >seq9 Length=429888 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || || || || || | ||||| | ||||| ||| | || ||||| Sbjct 62931 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 62990 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || ||| ||| || || || ||||| || || || || |||||| | Sbjct 62991 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 63050 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || ||| | ||||| | ||||| |||| | | ||||| ||||||| Sbjct 63051 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTG--ACTACAACATTCAAA 63108 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| | || ||||| || ||||||||||| || Sbjct 63109 AAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 63148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093287264000