Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001737985.1_202016-09- 21] 587 sequences; 12,409,833 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 seq9 134 1e-26 seq124 125 6e-24 seq11 122 8e-23 seq456 118 9e-22 seq228 82.4 7e-11 >seq12 Length=1053926 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||||||| |||| ||| | ||||| || || || Sbjct 62380 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 62321 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | |||| ||| ||||| ||||| || || || || || Sbjct 62320 GATACCATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATCCCTCCAGATCA 62262 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| || || ||||||| | | | || || |||||||| Sbjct 62261 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAA 62202 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| ||||| | ||||||||||||||||| || Sbjct 62201 CATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 62154 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| |||||||| | || || | ||||| || || ||| Sbjct 496826 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 496885 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || ||| ||||| ||||| ||||||||||||| Sbjct 496886 GACACTATTGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACC 496943 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || || ||||| ||||||| | | ||| || ||| |||| Sbjct 496944 AACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACA 497003 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || ||||| || || | || | ||||| || Sbjct 497004 ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 497052 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||||||| ||||||| | || || || || || Sbjct 62152 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 62093 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| |||||| ||||| ||||| || || || || || Sbjct 62092 GACACGATCGA-TAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 62034 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || |||||||| || | ||||||| | | | || || || ||||| Sbjct 62033 ACAGAGGTTGATCTTTGCCGGTAAGTAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 61974 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || || || ||| | || | ||||| || Sbjct 61973 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 61926 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 61104 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 61045 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 61044 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 60986 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | ||||||||||| |||||| ||||||||| | | || || || ||||| Sbjct 60985 GCAAAGATTGATTTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 60926 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || ||||| || || Sbjct 60925 TATTCAAAAGGAGTCCACTCTTCA 60902 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| ||||| | || || | || || || || ||| Sbjct 61413 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 61354 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 61353 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 61295 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | ||||||||||| || ||| ||||||||| | | || || || ||||| Sbjct 61294 GCAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 61235 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || ||||| || || Sbjct 61234 TATTCAAAAGGAGTCCACTCTTCA 61211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 61924 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 61865 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 61864 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 61806 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 || | | ||||||||||| || ||| ||||||||| Sbjct 61805 GCAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATG 61768 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || || | || || | || || || || || Sbjct 61641 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 61582 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| ||| |||| ||| ||||| ||||| ||||| || || Sbjct 61581 GACACTATTGACAACGTCAA--AAGTAAAAT-TCAA-GACAAGGAAGGTATTCCTCCAGA 61526 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||||||||| || ||| ||||||||| | | || || || || Sbjct 61525 TCAACAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTA 61466 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || || || | ||| | || | ||||| || Sbjct 61465 CAACATCCAAAAGGAATCTACTCTTCACCTGGTGTTGAGATTGAGAGGTGG 61415 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| ||| ||||| ||||| ||||| || ||||| || | | ||||||||||| || Sbjct 60719 AAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAA 60661 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||| ||||||||| | | || || || |||||||||||||| || ||||| || || Sbjct 60660 GCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTCCACTCTTCA 60601 >seq9 Length=460329 Score = 134 bits (148), Expect = 1e-26 Identities = 165/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 ||||| ||||||||||| ||||| ||||||| | ||||| || || ||||||||||| Sbjct 77664 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 77723 Query 25068 GAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || || ||| |||| | ||| ||||| ||||| || |||||||||||||| | Sbjct 77724 GA--CAATGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATCCCACCTGACCAACAAAGA 77780 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||| || || ||||| ||||| | | | || || || ||||| |||||| Sbjct 77781 TTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAA 77840 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| | || ||||| | || | ||||| || Sbjct 77841 AAAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 77881 >seq124 Length=708 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||||||| |||| ||| | ||||| || || || Sbjct 623 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 564 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | |||| ||| ||||| ||||| ||||| || || || Sbjct 563 GATACCATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 505 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||||||||| || ||| | ||||| | | | || || ||||| || Sbjct 504 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAA 445 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| || ||| | ||||| ||| | || | ||||| || Sbjct 444 CATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 167 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 108 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 107 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 49 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 || | | ||||||||||| || ||| ||||||||| Sbjct 48 GCAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATG 11 >seq11 Length=652227 Score = 122 bits (134), Expect = 8e-23 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||||||||| ||||| ||||||| | ||||| || || |||||||| || Sbjct 621087 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 621028 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| ||||| || |||||||||||||| | Sbjct 621027 GA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGAT 620970 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || ||||| || || ||||| ||||| | | | ||| | || ||||| || |||| Sbjct 620969 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAA 620910 Query 25186 AAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| ||||||| || | || ||||||| || Sbjct 620909 AGGAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGG 620870 >seq456 Length=383 Score = 118 bits (130), Expect = 9e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 311 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 252 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 251 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 193 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | ||||||||||| || ||| ||||||||| | | || || || ||||| Sbjct 192 GCAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 133 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || ||||| || || Sbjct 132 TATTCAAAAGGAGTCCACTCTTCA 109 >seq228 Length=549 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| ||| ||||| ||||| ||||| || ||||| || | | ||||||||||| || Sbjct 13 AAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAA 71 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||| ||||||||| | | || || || |||||||||||||| || ||||| || || Sbjct 72 GCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTCCACTCTTCA 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324899944405