Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001737985.1_202016-09- 21] 587 sequences; 12,409,833 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 100 3e-16 seq124 96.9 3e-15 seq456 91.5 1e-13 seq9 89.7 5e-13 >seq12 Length=1053926 Score = 100 bits (110), Expect = 3e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||||| | | |||||||| ||||||||||| || || || | ||| || || || Sbjct 62177 ATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTG 62236 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 ||||||| | |||| | | ||||| || ||||| |||||||| ||||| ||| ||| Sbjct 62237 CTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTC-TTGAATTT 62295 Query 138531 TTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 | | |||| ||| || | ||| |||| || || || || | || | |||||||| Sbjct 62296 TCGACTTAACGTTG-TCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCG 62354 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| || || ||||||||||| Sbjct 62355 GTCAAAGTCTTGACGAAAATCTGCAT 62380 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||| ||||||||||| | Sbjct 61926 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 61985 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || | ||||||| | |||| | | |||||| || ||||| Sbjct 61986 AAGGTTCTACCGTCTTCTAGCTACTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 62045 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| |||||| || | | || | ||||||| || || ||| Sbjct 62046 ATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACC 62105 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| ||| || ||||| |||||||| Sbjct 62106 TCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 62152 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || || | || || ||||||||||||| | Sbjct 60911 GACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACCGGCA 60970 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | | || ||||| ||||| |||||||| ||||| ||| |||| | |||| Sbjct 60971 AAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGACTTAAC 61029 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | || || ||||| | || | || ||||| ||||| || | Sbjct 61030 GTTG-TCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCT 61088 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 61089 TGACAAAAATTTGCAT 61104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || || | || || ||||| ||||||| | Sbjct 61220 GACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCA 61279 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | | || ||||| ||||| |||||||| ||||| ||| |||| | |||| Sbjct 61280 AAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGACTTAAC 61338 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | || || ||||| | || | || ||||| ||||| || | Sbjct 61339 GTTG-TCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCT 61397 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||| ||||| Sbjct 61398 TGACGAAAATTTGCAT 61413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || | || | | || |||||||| ||||||||||| | Sbjct 61415 CCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 61474 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || || ||||| ||||||| | | || | | ||||| || ||||| Sbjct 61475 AAGGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 61534 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| |||| | ||| || | ||||||| || || | Sbjct 61535 ATACCTTCCTTGTC-TTGAATTTTACTTTTGACGTTG-TCAATAGTGTCGGAAGATTCAA 61592 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || |||||||| || ||||| ||||| Sbjct 61593 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 61641 >seq124 Length=708 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || ||||| | | ||||| || |||||||| || || | Sbjct 397 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 456 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || ||||| ||||||| | | || | | ||||| || ||||| Sbjct 457 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 516 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| | |||| |||| | | ||| |||| || || | Sbjct 517 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGT-CGATGGTATCGGAAGATTCAA 574 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | |||||||| |||| ||| || || ||||||||||| Sbjct 575 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||| ||||||||||| | Sbjct 169 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 228 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || || ||||| ||||| | | | || | | |||||| |||||||| Sbjct 229 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 288 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||||| || ||| | || |||| | ||| || | ||||||| || || | Sbjct 289 ATACCTTCTTTATC-TTGAATCTTACTTTTGACGTTG-TCAATAGTGTCGGAAGATTCAA 346 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || |||||||| || ||||| ||||| Sbjct 347 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 395 >seq456 Length=383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || || | || || ||||| ||||||| | Sbjct 118 GACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCA 177 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | | || ||||| ||||| |||||||| ||||| ||| |||| | |||| Sbjct 178 AAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGACTTAAC 236 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | || || ||||| | || | || ||||| ||||| || | Sbjct 237 GTTG-TCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCT 295 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 296 TGACAAAAATTTGCAT 311 >seq9 Length=460329 Score = 89.7 bits (98), Expect = 5e-13 Identities = 311/482 (65%), Gaps = 10/482 (2%) Strand=Plus/Plus Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 ||||| ||| |||| |||| || || ||||| | || | ||||| ||||| ||| Sbjct 249070 GGTTCGAAGCATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGTTGGCATTGGTGCC 249129 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | |||||| || | || || || |||||| | | || | | ||||||| Sbjct 249130 ATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAAGGTTTCCCAATCC 249189 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 |||| | | ||| | ||||||||||| ||| | ||||| | || | || ||| Sbjct 249190 CACATGCCAAATGGTTTAGCGTTCCACATATCGAATTGTAAAATACCCTTAGAAGCTGGA 249249 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || |||| ||| || | || || |||||||| ||| ||| || || || Sbjct 249250 GAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCCAATTCACAGGAGGCTTCAAGA 249309 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 | ||| ||| || |||||| ||||||||| || ||| |||||||| || Sbjct 249310 GTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGAGTTTGAGCTTCTTCCGATTCA 249369 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 | || | |||| || || | | | ||||||| |||||||| ||| | | || ||| Sbjct 249370 AAGGGTAGACGCAACATCATATAAGTATCGGCCAAACCCTGGACACCAAGAGCAATAGGT 249429 Query 153447 CGATGCTTC-TCGTTG--CTGC--GCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 | ||||||| | ||| | | |||||| | | ||||||| ||| || |||| Sbjct 249430 CTATGCTTCATATTTGAATTTCTAGCCTCG-----GGAACTGGATAGTAATTACGGTCGA 249484 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 ||| | |||| | |||| | | ||||||| ||| | | | | ||||||||| || Sbjct 249485 TAACTCTGTTCAAGTTGTGAGTAATGACTTTAGCAATCTCGTGCAATCTCTCGAAATTAT 249544 Query 153562 AG 153563 || Sbjct 249545 AG 249546 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| ||||| || | | || || ||||||||||||||||| | Sbjct 77881 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 77822 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||| ||||| | | |||| | | |||||||| || || Sbjct 77821 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 77762 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | |||| || |||| || | ||||| | || || | Sbjct 77761 ATACCTTCCTTGTC-TTGAATCTTTGACTTGACATTG-TCAATAGTGTCAGAAGATTCAA 77704 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | || | || | || |||||||||| ||| || |||||| Sbjct 77703 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 77663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258758674640