Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738005.1_202016-09- 21] 112 sequences; 12,077,255 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 120 5e-22 seq9 114 2e-20 seq15 113 7e-20 >seq12 Length=1041461 Score = 120 bits (132), Expect = 5e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||||||| || |||||||| ||||| ||||| | Sbjct 60575 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 60516 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||||||||| || |||||||| || || |||||| Sbjct 60515 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 60456 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || || ||| |||| ||| || |||| | || || ||| Sbjct 60455 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 60396 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 |||||||| || || ||| | || | || || | || | ||||||| Sbjct 60395 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGTA 60347 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| ||||| | || ||||| | Sbjct 61031 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 60972 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || |||||||||||| || |||||||| || || |||||| Sbjct 60971 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 60912 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || || |||| || || |||| | ||||| || Sbjct 60911 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 60852 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || || ||| | || || | || |||||||||| Sbjct 60851 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTAT 60802 >seq9 Length=424427 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| | || || || || || ||| | || ||||| | ||| || ||| Sbjct 68289 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 68348 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || |||||||| || |||||||| |||||||| |||||||| | Sbjct 68349 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 68408 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || ||||| || || ||||| || || || |||| || || || || ||||||||| Sbjct 68409 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 68468 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || || || | || |||||||||| Sbjct 68469 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 68509 >seq15 Length=1076730 Score = 113 bits (124), Expect = 7e-20 Identities = 359/556 (65%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 205318 CtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCA 205377 ||||| || |||| ||| || ||||| |||| | | | ||||| ||| || || Sbjct 462186 CTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGTGATTTGTTCTTTCAAGGCA 462245 Query 205378 TTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTT 205437 | ||| || | ||| | |||||||| || | | ||||||| || ||| ||| | Sbjct 462246 TCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCC 462305 Query 205438 AAATTAGTTAAATGT-GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGG 205496 | | | || | | |||||||| |||||| ||| ||| |||| |||||||| Sbjct 462306 ATGTC-GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAATGG 462364 Query 205497 TACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAG------------ 205544 ||| || || ||||||||| || | ||| |||| | |||| ||| Sbjct 462365 TACTCCCAACCCCATATCACAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACC 462424 Query 205545 --ATATTTATTATTAATT----------ACATGAAATTGTACAAAACAATGACAAGGTGG 205592 || || | || || |||| || ||| |||| ||| || || || Sbjct 462425 GGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGCGG 462484 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | | |||| || |||| ||| || |||||||| | | || || ||||| | Sbjct 462485 CAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTA 462544 Query 205653 AGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATA 205712 || || | |||| ||||| |||| ||| | |||||||||| ||||| ||||| Sbjct 462545 GGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATA 462604 Query 205713 ATTTGTATC-CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771 | ||| || || | ||||||||||||||||| | ||||||||| |||||||| | Sbjct 462605 GTCGTCATCGCACGTCT-TGTATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGG 462663 Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATC 205831 | || | ||| ||| |||| ||||| || || || || | || ||||| |||| Sbjct 462664 GCCCCAGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATC 462723 Query 205832 CATTTTCATCCCAAAT 205847 |||| | |||||||| Sbjct 462724 CATTACCGTCCCAAAT 462739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454942361600