Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738135.2_202016-11- 09] 1,476 sequences; 13,250,481 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9 199 1e-45 seq5 197 4e-45 seq15 125 2e-23 >seq9 Length=460171 Score = 199 bits (220), Expect = 1e-45 Identities = 1069/1681 (64%), Gaps = 49/1681 (3%) Strand=Plus/Minus Query 363364 TATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTA 363423 || || | |||| || ||||| |||||||| ||||| ||||| || ||| | Sbjct 247178 TACGATAGGGATTTCCAGTATACGTATTTCGGATTCAAGACACTGGAGCGTTCGTACTTG 247119 Query 363424 TCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATT 363483 | | || ||||| | | ||||| || |||||| || |||||||||| || | Sbjct 247118 CTAAGACTGAACGGTGAAGTGGCAGAACGTCCTCAGCATTTGGTAATGCGTGTGGCGCTA 247059 Query 363484 GGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT 363543 ||||||||| | ||| | || | | | | | || ||||| || | || | Sbjct 247058 GGTATCCATGGTAGCGATATCGAATCTGTGCTGAAGACTTATAA--TTTGATGTCGTTAA 247001 Query 363544 G-TA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGT 363601 | || ||||| ||||| | ||||| | | ||| ||||| || | |||| || |||| Sbjct 247000 GATACTTCACTCACGCTTCCCCAACTTTATTCAACGCTGGTACGCCACATCCTCAAATGT 246941 Query 363602 CTTCTTGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTT 363660 |||| || |||||| | |||||||| || || ||||| ||||| | ||| || | Sbjct 246940 CTTCATG-TTTCTTAATTGCCATGAAGGATGACTCTATCGAAGGTATTTATGATACTTTG 246882 Query 363661 AAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTT 363720 || | |||||| | |||||||| | |||||| || ||||| | ||| |||| | Sbjct 246881 AAAGAATGTGCTATGATTTCCAAAACTGCAGGTGGTGTTGGTCTTCATATCAACAACATC 246822 Query 363721 CGTGC-ACAGAACAGTTACATTCGC-GGCACAGGGGGATACT-CGAATGGGCTGGTTCCC 363777 ||| | |||| ||| || ||| || || || |||| | || ||| || |||| Sbjct 246821 CGTTCCACAGGTTC-TTATAT-CGCTGGTACCAACGG-TACTTCAAACGGGTTGATTCCT 246765 Query 363778 ATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAA 363837 ||| ||||||| || | |||||||| | || || ||||||||||| ||| | Sbjct 246764 ATGATTCGTGTTTTCAATAATACTGCCCGTTATGTGGACCAGGGTGGTAACAAGAGACCT 246705 Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || || || || | | | ||||| ||||| ||||| || || ||| | || || Sbjct 246704 GGTGCTTTCGCCCTTTTCTTGGAGCCATGGCATGCAGATATCTTCGACTTTGTCGATATC 246645 Query 363898 CGGAAAAACACG-GGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 | |||||||| || || || ||| | |||||| | ||| ||||| ||| || ||| | Sbjct 246644 AG-AAAAACACATGGTAAGGAAGAAATTCGTGCAAGAGATTTGTTCCCTGCTCTATGGAT 246586 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 |||| | ||| ||||| || || | | | | | |||| | | |||| || || Sbjct 246585 CCCTGATCTTTTCATGAAACGTGTTCAAGAGGATGGGCCTTGGACTTTGTTTTCGCC-CA 246527 Query 364017 CGAATGTCC-AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 || || |||| | ||||| |||||||| || | || | ||||| | Sbjct 246526 GTGCTGCCCCAGGTTTAGATGATGTGTGGGGTGATGAATTTGAAGAACTATATACTCGTT 246467 Query 364076 ATGAATCGGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 | ||| || ||| | | | |||| |||||| || || ||| | |||| |||||| Sbjct 246466 ACGAA----AGAGAAGGTCGTGGTAAAACAATTAAAGCCCAAAAGTTGTGGTATGCCATT 246411 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 || | | |||| || ||||| ||||| | ||| | || || || | || ||| | Sbjct 246410 TTGCAAGCACAGACAGAAACAGGTACACCTTTCATGGTTTATAAGGACGCATGTAACAGG 246351 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTAT 364253 ||| | ||||| ||| || | ||||| || || | | ||| ||||| || || | Sbjct 246350 AAGACAAACCAACAGAACTTAGGTACTAT-CAAATCATCTAACTTATGTTGTGAAATCGT 246292 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||||| || | || || || ||||| || ||||| | || || || || || || || Sbjct 246291 CGAATATTCCTCCCCGGATGAAACTGCAGTTTGTAATTTAGCTTCTATTGCCCTACCAGC 246232 Query 364314 GTTTGT---------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAAC--- 364361 || || | ||||||||| || | | || | | || | || Sbjct 246231 ATTCGTTGAGGTTTCAGAAGATGGTAAAACTGCAAGCTATAATTTCGA-GAGATTACACG 246173 Query 364362 ------CTA---TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCC 364412 ||| |||| |||| ||| | ||| ||||||||| ||||| ||||| Sbjct 246172 AGATTGCTAAAGTCAT--TACTCACAACTTGAACAGAGTTATCGACCGTAATTACTATCC 246115 Query 364413 AATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGG 364472 | |||| || || ||| |||||| ||| | || |||| ||||||||| ||||| Sbjct 246114 AGTTCCCGAGGCTAGAAATTCAAATATGAAGCATAGACCTATTGCTCTTGGTGTCCAGGG 246055 Query 364473 CCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCT 364532 | || || || ||||||| | | | ||||| ||| | |||| ||| Sbjct 246054 TTTGGCCGATACTTATATGATGTTGCGTCTACCCTTTGAATCGGAAGTAGCTCAAACTCT 245995 Query 364533 AAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGC 364592 ||| || | ||||| ||||| || || ||| | | || || ||||| ||||| Sbjct 245994 AAACAAACAAATCTTCGAAACTATTTACCATGCTACTCTTGAAGCCTCCTGTGAATTGGC 245935 Query 364593 A-AAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCC 364651 |||| |||| ||| || ||||||| ||| || || || ||| |||| | || | Sbjct 245934 CCAAAAAGAAGGTAAA-TATTCTACTTTTGAAGGTTCTCCAGCTTCTAAGGGTATTTTAC 245876 Query 364652 AGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCA 364711 | || ||| | ||||| | | |||| || | ||| | ||||| || || | Sbjct 245875 AATTCGATATGTGGAACGCTAAACCATTTGGCATGTGGGATTGGGAAACCTTAAGAAAGG 245816 Query 364712 ACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTA 364771 || || || ||||| | ||||| | || || || ||||| || || || | Sbjct 245815 ACATTGTTAAACATGGGTTAAGAAACTCTTTGACTATGGCACCAATGCCAACCGCCTCAA 245756 Query 364772 CTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCAC 364831 || | || || || || | || || ||||||||||| | || || | || || | Sbjct 245755 CTTCCCAAATTCTTGGTTATAATGAATGCTTCGAACCAGTGACCTCAAACATGTACTCTC 245696 Query 364832 GCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCG 364891 | || || || || || ||||| | || |||||| || || | ||| | || Sbjct 245695 GTCGTGTCCTGTCTGGTGAATTCCAAGTTGTTAATCCATATTTACTACGTGATTTAGTCG 245636 Query 364892 ACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGC 364951 ||| || | |||| ||| || ||||| | ||| | || | ||||||||| | | Sbjct 245635 ACCTGGGTATTTGGGATGATAGTATGAAACAATATCTAATTACACAAAATGGTTCTATTC 245576 Query 364952 AGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTT 365011 | | | ||| | ||| |||| ||||| | ||||||||||| |||||||| | Sbjct 245575 AAGGCTTACCAAATGTGCCACAAGAATTGAAGGAATTATACAAAACCGTCTGGGAAATCT 245516 Query 365012 C 365012 | Sbjct 245515 C 245515 >seq5 Length=588754 Score = 197 bits (218), Expect = 4e-45 Identities = 698/1076 (65%), Gaps = 57/1076 (5%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || |||||| | ||||| ||| |||||| || |||| || || || ||||| ||| Sbjct 309163 TTTACTCACGCCTCTCCAACGTTGTTCAATGCCGGTACTCCAAAACCTCAAATGTCCTCT 309222 Query 363607 TGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 || |||||| | |||||||| || || |||||||| || | ||||| | ||| | Sbjct 309223 TG-TTTCTTGGTTGCCATGAAGGAGGACTCTATCGAGGGGATTTACGACACCTTGAAGGA 309281 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | |||||||| | ||| || || |||||| || ||||| || ||||| | Sbjct 309282 ATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTC 309341 Query 363726 ACAGAACAG----TTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATG 363780 | || | ||||||| || ||| || |||| | || || | |||| ||| Sbjct 309342 A----ACTGGTTCTTACATTGCTGGTACAAACGG-TACTTCTAACGGTTTAATTCCTATG 309396 Query 363781 CTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAG 363838 ||||||| || | || ||||| | || || ||||||||||| | |||| | | Sbjct 309397 ATTCGTGTTTTCAATAACACTGCCCGTTATGTTGACCAGGGTGGTAATAAAAGACC--TG 309454 Query 363839 GGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCC 363898 | |||||||| | || || || || ||||| ||||| ||||| ||| |||| | Sbjct 309455 GTGCGTTTGCCCTTTACCTGGAACCATGGCATGCTGATATATTTGATTTTATTGATATTA 309514 Query 363899 GGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTT 363958 |||| ||| || ||||||||| | |||||| | ||| ||||| ||| || ||| || Sbjct 309515 GGAAGAACCACGGTAAAGAGGAAATTCGTGCAAGAGATTTGTTCCCTGCTCTATGGATTC 309574 Query 363959 CTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACG 364018 |||| | ||| |||||||| || || | | | || ||| || | || | ||| Sbjct 309575 CTGATCTTTTCATGAAGCGTGTCGAAGAAAATGGGACCTGGACATTATTCTCTCCAACAT 309634 Query 364019 AATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078 | ||| ||| | |||| | |||||||| | || |||||||| || | Sbjct 309635 CAGCTCCTGGTTTAAGCGATTGTTACGGTGACGAGTTTGAGGCTCTATATACCCGCTACG 309694 Query 364079 AATCGGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG 364137 | || ||| | | | ||||||| || || || || |||||| | |||| || Sbjct 309695 A----GAAAGAAGGTCGTGGTAAGACTATCAAAGCCCAAAAATTATGGTATTCCATTTTG 309750 Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197 || | || | ||| || || ||||| | | | ||||| ||| | || ||| | || Sbjct 309751 GAAGCTCAAACTGAAACTGGTACACCTTTCGTTGTTTACAAGGATGCTTGTAACAGAAAA 309810 Query 364198 TCCAACCAGCAGCACCTTGGT----ACAATTCAGCAGAGCAACCTATGTACCGAGATTAT 364253 || || || | || | ||| ||| ||| || ||| |||| || ||| | Sbjct 309811 TCTAATCAAAAAAACTTAGGTGTCATCAAGTCATCA----AACTTATGCTGTGAAATTGT 309866 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||||||| | ||||| || || ||||| || |||||| | || || | || | || || Sbjct 309867 TGAATACTCAGCTCCAGATGAAACTGCTGTTTGTAACTTGGCTTCCGTTGCCTTACCAGC 309926 Query 364314 GT---TTGTAA------AAGATGGT---ACTTTTGACCAC---CAGCATC-------TTT 364351 | ||| || | |||||| |||| |||| || | || | Sbjct 309927 ATTCATTGAAACTTCTGAGGATGGTAAGACTT----CCACATACAACTTCAAAAAATTAC 309982 Query 364352 ATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATC 364411 |||| | | | || |||| | ||| | ||| || || || ||||| || | Sbjct 309983 ATGAAATTGCTAAAGTTGTTACTCGTAATTTAAACAGAGTCATTGATCGTAATTACTACC 310042 Query 364412 CAATTCCTGAAGCCGAG-CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAG 364470 | || |||| |||| || |||||| | ||| | || |||| | | ||||| || Sbjct 310043 CTGTTGAAGAAG-CGAGAAAATCCAATATGAGACATAGACCAATTGCTTTGGGTGTTCAA 310101 Query 364471 GGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTT 364530 || ||||||||| ||| ||| || | || |||||||||| || || ||| | Sbjct 310102 GGTCTCGCTGACACTTTCATGCTGTTACGTTTGCCATTTGATTCTGAGGAAGCCCGTTTG 310161 Query 364531 CTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGA 364586 ||||||| | ||||||||||| || ||| |||| | ||| ||||| ||||| Sbjct 310162 CTAAATATCCAAATCTTTGAAACTATTTATCATGCCTCCATGGAAGCTTCTTGTGA 310217 >seq15 Length=1087629 Score = 125 bits (138), Expect = 2e-23 Identities = 340/515 (66%), Gaps = 34/515 (7%) Strand=Plus/Minus Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-G 111477 ||| || |||||||| || |||||||| ||||| | | ||||| || ||| || | Sbjct 473457 TGTTAAGATTTGGGACGGTAATGGATCTCGTGAATATTTAGATA-AGATGGGGTTCAAAG 473399 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 | | ||| ||| ||||| || || ||||| |||||||||||| | || |||||||| Sbjct 473398 ATAGGAAAGTAGGAGATCTGGGGCCCGTTTATGGATTTCAATGGAGGCATTTTGGTGCTA 473339 Query 111538 ACTACAAAACCATGC-ACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTC 111596 | ||||| || ||| | ||| ||| | ||| || | ||||||||| | | || Sbjct 473338 AATACAAGACG-TGCGATGACGACTATACTGGACAAGGTATTGATCAATTGAAACAGGTT 473280 Query 111597 ATTGATCAAATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCC 111655 ||| || || | |||| || ||| || | | | || ||||||||||| |||||||| Sbjct 473279 ATTCATAAACTAAAGACAAATCCCTACGA-TAGAAGAATCATTATGAGTGCCTGGAACCC 473221 Query 111656 AAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG---- 111711 | || || || |||||||| | |||||||| ||| || | | ||||| |||| Sbjct 473220 AGCTGATTTTGACAAAATGGCTTTGCCACCATGCCATATTTTTTCACAGTTCTATGTCAG 473161 Query 111712 --TACACGACG--------GGAT-------------GCTTTCATGCCAAATGTATCAGCG 111748 | | | | | |||| ||||||||| | |||| || || Sbjct 473160 TTTCCCCAAAGAAGGAGAAGGATCCGGTAAGCCCCGCCTTTCATGCTTATTGTACCAACG 473101 Query 111749 ATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTG 111808 ||| |||||| || | || || || ||||| |||||| || || | | ||| | Sbjct 473100 TTCTTGTGATATGGGGTTGGGAGTACCATTTAACATTGCATCATATGCTTTGTTGACTAG 473041 Query 111809 CTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGC 111868 | || ||| | || | | | || ||||| |||||||| | | || ||||| Sbjct 473040 AATGATTGCTAAAGTTGTCGACATGGAGCCAGGTGAGTTCATTCATACTTTGGGGGATGC 472981 Query 111869 GCATGTTTACACAAACCACATTGATGCACTTAAAA 111903 |||||||| | | ||||||||||||| ||| ||| Sbjct 472980 ACATGTTTATAAAGACCACATTGATGC-CTTGAAA 472947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303328951954232