Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738235.1_202016-09- 21] 93 sequences; 11,788,988 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 132 7e-26 seq9 114 2e-20 seq15 109 8e-19 >seq12 Length=1045364 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||||||| || |||||||| ||||| ||||| | Sbjct 59587 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 59528 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||||||||||||||||||||| || || |||||| Sbjct 59527 GACACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 59468 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || || ||| |||| ||| || |||| || || || || Sbjct 59467 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 59408 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || || || || || ||| | || || | || |||||||||| ||| || Sbjct 59407 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTATGCAAATTT 59350 Score = 123 bits (136), Expect = 4e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | |||||||| ||||| || |||||||| ||||| ||||| | | Sbjct 59359 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 59300 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || ||||||||||| || |||||||| || || || || Sbjct 59299 GACACTATTGACAACGTTAAGTCA-AAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 59241 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | |||||||| || |||||| |||| ||| || |||| | || || || Sbjct 59240 GCAAAGATTGATTTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 59181 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 ||||||||| || || ||| | || | || || | || | ||||||| Sbjct 59180 TATTCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGGTA 59131 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || ||||| || ||| ||||| ||||| | Sbjct 59815 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 59756 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || |||||| || || || |||||||| || || |||||| Sbjct 59755 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 59696 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || ||| | || || || |||| | |||||||| Sbjct 59695 CAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 59636 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||| || || ||||||||||| || | || |||||||||| ||| || Sbjct 59635 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 59578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| ||||| | || ||||| | Sbjct 60271 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 60212 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || |||||||||||| || |||||||| || || |||||| Sbjct 60211 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 60152 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || || |||| || || |||| | ||||| || Sbjct 60151 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 60092 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || || ||| | || || | || |||||||||| Sbjct 60091 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTAT 60042 >seq9 Length=440246 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| | || || || || || ||| | || ||||| | ||| || ||| Sbjct 71499 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 71558 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || |||||||| || |||||||| |||||||| |||||||| | Sbjct 71559 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 71618 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || ||||| || || ||||| || || || |||| || || || || ||||||||| Sbjct 71619 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 71678 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || || || | || |||||||||| Sbjct 71679 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 71719 >seq15 Length=1057515 Score = 109 bits (120), Expect = 8e-19 Identities = 358/556 (64%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 205318 CtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCA 205377 ||||| || |||| ||| || ||||| |||| | | | ||||| ||| || || Sbjct 453551 CTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGTGATTTGTTCTTTCAAGGCA 453610 Query 205378 TTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTT 205437 | ||| || | ||| | |||||||| || | | ||||||| || ||| ||| | Sbjct 453611 TCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCC 453670 Query 205438 AAATTAGTTAAATGT-GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGG 205496 | | | || | | |||||||| |||||| ||| ||| |||| |||||||| Sbjct 453671 ATGTC-GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAATGG 453729 Query 205497 TACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAG------------ 205544 ||| || || ||||||||| || | ||| |||| | |||| ||| Sbjct 453730 TACTCCCAACCCCATATCACAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACC 453789 Query 205545 --ATATTTATTATTAATT----------ACATGAAATTGTACAAAACAATGACAAGGTGG 205592 || || | || || |||| || ||| |||| ||| || || || Sbjct 453790 GGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGCGG 453849 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | | |||| || |||| ||| || |||||||| | | || || ||||| | Sbjct 453850 CAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTA 453909 Query 205653 AGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATA 205712 || || | || | ||||| |||| ||| | |||||||||| ||||| ||||| Sbjct 453910 GGGATTTGTCTTAAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATA 453969 Query 205713 ATTTGTATC-CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771 | ||| || || | ||||||||||||||||| | ||||||||| |||||||| | Sbjct 453970 GTCGTCATCGCACGTCT-TGTATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGG 454028 Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATC 205831 | || | ||| ||| |||| ||||| || || || || | || ||||| |||| Sbjct 454029 GCCCCAGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATC 454088 Query 205832 CATTTTCATCCCAAAT 205847 |||| | |||||||| Sbjct 454089 CATTACCGTCCCAAAT 454104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455121782400