Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738235.1_202016-09- 21] 93 sequences; 11,788,988 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12 113 7e-20 seq11 107 3e-18 seq9 89.7 8e-13 >seq12 Length=1045364 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || ||||| |||| ||||||||| || || || || || || Sbjct 489770 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 489711 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || ||||| || |||||||| ||||||||||| || || || ||| Sbjct 489710 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 489651 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||| ||| Sbjct 489650 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 489591 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || || || || ||||| ||||| || || | ||| |||||||| || Sbjct 489590 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 489541 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || |||| || | |||||| || || || || || || || || || Sbjct 59361 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAGTCAGAC 59420 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||| ||| || ||||||||||||||||| || ||||||||||| Sbjct 59421 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 59480 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| || ||| ||| || Sbjct 59481 ATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 59540 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || || ||||||| ||||| | ||| |||||||| Sbjct 59541 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 59587 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||| || ||||| ||||| || |||||||| || Sbjct 59589 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 59648 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || | ||| || || ||||| ||||||||||| ||||| ||||| Sbjct 59649 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 59708 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 59709 ATACCTTCCTTGTCCTG 59725 Score = 102 bits (112), Expect = 1e-16 Identities = 156/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || | || || || | || | ||| || || ||| || ||||| || || || Sbjct 59133 CCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCCGA 59191 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| |||| |||||| || |||||||||||||||||||| || ||||| Sbjct 59192 CAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGG 59251 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| ||| || ||| ||| || Sbjct 59252 AATACCTTCCTTGTCTTGAATTTTTGACTTAACGTTGTCAATAGTGTCAGAAGATTCAAC 59311 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || |||||||| | ||| || | ||| |||||||| Sbjct 59312 CTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 59359 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/237 (67%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || |||| || | |||||| || || || || || || ||||| || Sbjct 60045 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 60104 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || |||| || || || ||||| ||||||||||| ||||| ||||| Sbjct 60105 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 60164 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||||| ||| ||| ||| Sbjct 60165 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 60224 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT--TTTATTAG 146285 || | ||| || |||||||| || || || || | ||| || ||||| | |||||| Sbjct 60225 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 60281 >seq11 Length=655691 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||||||||| ||||| || || || || || || Sbjct 615422 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 615481 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 615482 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 615541 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 615542 ATACCTTCCTTGTCTTG 615558 >seq9 Length=440246 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || || || ||||| |||||||| || || || || || Sbjct 71716 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 71657 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 71656 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 71597 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 71596 ATACCTTCCTTGTCTTG 71580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525535650560