Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738235.1_202016-09- 21] 93 sequences; 11,788,988 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10 174 1e-38 >seq10 Length=688820 Score = 174 bits (192), Expect = 1e-38 Identities = 561/857 (65%), Gaps = 39/857 (5%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| ||||| || || |||||| ||||| || ||||| || || Sbjct 381499 TTGGACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTA 381440 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA-TAGTATTTTTT 12960 || | || || || |||||||| |||||||| || |||| ||| | |||||||| || Sbjct 381439 CCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTT-CGACCTTGTAGTATTTCTT 381381 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 || || | | |||| |||||| || || ||||| | ||| || |||||||| || Sbjct 381380 GTTACCGAAAGCAACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTC 381321 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt---ttttttCTAT 13077 | |||||| |||| || || || | || || || |||| ||| ||| || Sbjct 381320 AGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC---AAGAAGTATCTTTGTTCAAT 381264 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----A 13133 || || || ||| | || || | | | | || | || || |||| | | Sbjct 381263 TTCCACAGCCTCGGTGACAATTTTT-TCA--ACAATGGCTGGGTCTGG-TTTGTTCTTCA 381208 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCT 13193 ||| |||| || |||||||| || |||||| ||||| ||||||| || | | Sbjct 381207 AATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATT 381148 Query 13194 CGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAA 13253 |||| ||||| |||| ||| ||||| | |||| ||||| | ||| || || | |||| Sbjct 381147 CGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAA 381088 Query 13254 ACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG 13313 | ||||| || ||||| | ||||||| | ||||| || | | ||||||||| || Sbjct 381087 AGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACA 381028 Query 13314 TACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 | | ||| | |||| || ||||| | || || | || | ||| Sbjct 381027 -AGGCGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTC----ACCGATTTC 380973 Query 13373 ----ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGT 13428 || | | || || || || || | | |||| ||| ||| || ||||| Sbjct 380972 TGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGT 380913 Query 13429 ATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATA 13488 ||| ||||| ||| || |||| || ||||||||||| ||| ||||||||||| || Sbjct 380912 ATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTA 380853 Query 13489 AAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 |||| | ||||||| | || ||||||| | | || |||| | |||||||| || Sbjct 380852 GAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATT 380793 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGCAAG---TATGTGCTTAATAAAt---ttttt 13602 ||| || |||||| ||| || ||||| ||||| | || | | |||| | || Sbjct 380792 AACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTT 380733 Query 13603 ttCGTT--TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 ||||| ||||| || ||| || | | ||| || || ||||| | || ||| Sbjct 380732 CTCGTTCATTCTG-----TTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCA 380678 Query 13661 ACGGTCCAAAAAGAAGC 13677 ||||||| |||||||| Sbjct 380677 GCGGTCCAGAAAGAAGC 380661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981911508386