Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738235.1_202016-09- 21] 93 sequences; 11,788,988 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 118 5e-22 seq9 93.3 2e-14 >seq5 Length=548777 Score = 118 bits (130), Expect = 5e-22 Identities = 310/473 (66%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| ||||||| ||| |||||| || || || ||| || | ||| |||| Sbjct 292674 TTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCAGGAA 292615 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||| || |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 292614 TCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAA 292555 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| | |||||||| ||||| | ||||||||||| | || | ||||| ||| Sbjct 292554 TATCAATAAAATCAAAGATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAG 292495 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 |||||| ||||| || || || || | || || | ||||||||| | ||| | Sbjct 292494 GTCTTTTATTACCACCCTGGTCAACATAACGGGCGGTGTTATTGAAAACACGAATCATAG 292435 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| ||| || | ||| |||||||| | | ||| | || || || || | ||| | Sbjct 292434 GAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGT 292375 Query 26190 CGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTG 26249 || ||| | ||| || |||||||| ||| ||||| ||||| || | | Sbjct 292374 TATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGG 292315 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| |||| || | || || | ||||| | | || |||||||| || | || Sbjct 292314 TGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTT 292255 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | || || | ||| || || || || | || |||||| ||||| Sbjct 292254 GAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATAT 292202 Score = 84.2 bits (92), Expect = 1e-11 Identities = 316/492 (64%), Gaps = 14/492 (3%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 ||||| | ||| ||||| || || |||||| ||||||||| |||||||||||||| | Sbjct 293848 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 293789 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGG-CAA-- 24811 |||||||| | || ||| | ||| || || |||| || |||| ||| ||| Sbjct 293788 GTTAGTTTACCCATAGTTGGGGCACGTAAGAATAAATTCAAAGAATGAGATTGATCAATA 293729 Query 24812 ---ACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAA 24868 ||| |||| ||| || || | || |||||| || || || || || || Sbjct 293728 TAGACAGAACG------ATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAA 293675 Query 24869 GCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCA 24928 | || |||||| || || | || ||||| | ||| | ||||| || ||| Sbjct 293674 ACAGTCTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAGCCTTGAATGGAGCCA 293615 Query 24929 TTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTTTCAAGATC 24987 |||| | | | |||| | | ||||| | ||||| | ||| | |||| || Sbjct 293614 TTTTGTGTAATCAGATACTGTTTCATACCCTCATCCCAAATACCTAAATCAACCAAG-TC 293556 Query 24988 TCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA 25047 | | |||| || | | ||||| || || || || | | | | Sbjct 293555 ACGCAGTAAGTAAGGGTTCACAACCTGGAATTCACCGGATAAGACACGACGGGAGTACAT 293496 Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 || ||||||| |||||| ||||||||||||| || || ||||| || || ||||| || Sbjct 293495 ATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGTGGATGCAGT 293436 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 |||||| ||| || | |||||||| | ||||| || | || |||| | |||| Sbjct 293435 AGGCATTGGTGCCATGGTCAAGGAATTTCTAATACCATGCTTCATGATATCTTTTCTTAA 293376 Query 25168 TTTATCCCAATC 25179 | |||||||| Sbjct 293375 GGTGTCCCAATC 293364 >seq9 Length=440246 Score = 93.3 bits (102), Expect = 2e-14 Identities = 162/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 |||||| || | |||||| ||||||||||||| || | ||||| ||||| || || || Sbjct 235916 GTTTGAGGTCACTGGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGT 235975 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| ||| || | || ||||| || |||| ||||||||| || | | |||| Sbjct 235976 TGGCATTGGTGCCATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAA 236035 Query 25168 TTTATCCCAATCTAAATTATTATCTAACTCG-ATATCGTTATCATATAAATCAAATTGTA 25226 | |||||||| | | | || | | || |||| || || ||| ||||||| Sbjct 236036 GGTTTCCCAATCCCACAT----GCCAAATGGTTTAGCGTT-CCACAT--ATCGAATTGTA 236088 Query 25227 ACAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTT 25274 | ||| | ||| | || || || |||||||| ||||||||||||| Sbjct 236089 A-AATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTT 236136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039713194975