Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738255.1_202016-09- 21] 87 sequences; 11,858,350 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9 199 8e-46 seq12 197 3e-45 seq11 176 9e-39 >seq9 Length=439328 Score = 199 bits (220), Expect = 8e-46 Identities = 176/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || |||||||||| ||| |||||||| || || || || |||| Sbjct 70590 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 70531 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 70530 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 70471 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||||| || ||||| ||||| || ||| || ||| | Sbjct 70470 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 70411 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| ||||| Sbjct 70410 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 70371 >seq12 Length=1004462 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 51678 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 51737 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || |||||||| | ||||||||||||||||| Sbjct 51738 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAG 51797 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || | || || || ||||| || ||| || ||| | Sbjct 51798 GAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAA 51857 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 51858 CCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 51906 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||||||||||||||| || || || Sbjct 52166 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTGCTTACCG 52225 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 52226 GCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTA 52285 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || ||||| || ||| |||||||| ||||| || || || ||||| ||| Sbjct 52286 ACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 52345 Query 82794 TTTACAAATATCTGCATTAT 82813 || || || |||||||| || Sbjct 52346 TTGACGAAAATCTGCATAAT 52365 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| ||||||||||| || || || || || || || Sbjct 453277 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 453218 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | ||| || ||||||||||| | ||||||||| || || || Sbjct 453217 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 453158 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| || Sbjct 453157 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 453098 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || || ||||| || || || ||||| Sbjct 453097 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 453050 Score = 167 bits (184), Expect = 5e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| |||| || ||||| | || || | ||| ||||| || || || || ||||| | Sbjct 51216 ATCAGTTACCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGT 51275 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || || || ||||||| |||||||||||||| || ||||| || | |||||| || | Sbjct 51276 AGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAAATCAATCTTTGCTGGT 51335 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 ||||||| || |||||||| |||||||| |||| || || || ||||| || ||| || Sbjct 51336 CTGGAGGAATACCTTCCTTGTCTTGAATTTTTGACTTAACGTTGTCAATAGTGTCAGAAG 51395 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 51396 ATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 51450 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 51906 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 51965 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||||||||||||||| || || || |||||||| | || ||||||||||||| Sbjct 51966 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 52025 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | || || || || ||||| || | ||| | Sbjct 52026 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 52085 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 52086 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 52134 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || | ||| ||||||||||| || || || || || |||| Sbjct 51450 TACCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 51509 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||| ||||||||||| || |||||||| || | ||| |||||||| |||| Sbjct 51510 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 51569 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || | || || || ||||| || ||| || ||| | Sbjct 51570 GGATACCTTCTTTATCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAA 51629 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| ||||| ||||| | || || || || || ||||| Sbjct 51630 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 51678 >seq11 Length=644980 Score = 176 bits (194), Expect = 9e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || | ||| ||||| || || || || || |||| Sbjct 604092 TACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 604151 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 604152 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 604211 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| | Sbjct 604212 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAA 604271 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| || || Sbjct 604272 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 604311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826105569493