Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738265.1_202016-09- 21] 117 sequences; 11,889,758 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11 145 2e-29 seq9 143 5e-29 seq12 138 2e-27 seq10 89.7 1e-12 >seq11 Length=657412 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || || ||||||||||| | || || ||| | Sbjct 616389 GTTCAATGATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGT 616448 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||||| |||| | || |||||||| |||||||||||||| ||||| |||| Sbjct 616449 TGTAGTCAGATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTT 616508 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| || ||||| || || || ||||| || | || | Sbjct 616509 GGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAG 616568 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 192523 | ||||| ||||| | ||| ||||| |||||||| || || |||| Sbjct 616569 AAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAA 616613 >seq9 Length=430996 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || ||||| || ||||| | ||||| || | Sbjct 62486 GTTCAATGATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGT 62427 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || |||| | || |||||||| |||||||||||||| ||||| |||| Sbjct 62426 TGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTT 62367 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| || ||||| || || || ||||| |||| || | Sbjct 62366 GGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAG 62307 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 | ||||| ||||| | ||| ||||| |||||||| || || || | ||| Sbjct 62306 AAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 62258 >seq12 Length=1047060 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || |||| ||||| || || ||| || || || || Sbjct 489080 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 489021 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| |||||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 489020 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 488961 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || || ||||| |||| || || ||||| || Sbjct 488960 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 488901 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||| || ||||| ||||| || || | || || ||||| || Sbjct 488900 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 488850 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || ||||| || |||| |||||| || ||||||||| Sbjct 59373 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 59432 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || |||| ||| ||||| |||||||| ||||| |||||||| || Sbjct 59433 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 59492 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| || || || |||| || || ||||| Sbjct 59493 GGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCA 59552 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || ||||| || | ||| || | ||| || ||||| Sbjct 59553 ACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 59602 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || | || | ||||| || || ||| || || ||| Sbjct 59145 ATACCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 59204 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| || | ||| ||||||||||| || |||||||||||||| || Sbjct 59205 GACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGA 59264 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| || || || |||| || || ||||| Sbjct 59265 GGGATACCTTCTTTATCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCA 59324 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || || || |||| ||||| | || || ||||| Sbjct 59325 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 59374 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || | ||||| || || ||| || || ||| Sbjct 59601 ATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 59660 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | || || | || ||||| |||||||| || ||||||||||| || Sbjct 59661 GACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 59720 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| || || ||| || | || || ||||| Sbjct 59721 GGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCA 59780 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| ||||||||||| || || || |||| ||| |||||||| Sbjct 59781 ACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 59830 Score = 120 bits (132), Expect = 6e-22 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | || || | |||||| || | ||| || || || |||||| Sbjct 59829 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 59888 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || || | || ||||| |||||||| ||||| |||||||| || Sbjct 59889 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 59948 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| || || || || | ||| || ||||| Sbjct 59949 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 60008 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT--TTTATTAG 192544 ||||| | || ||||||||||| || || || || | || |||||||| | |||||| Sbjct 60009 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 60068 >seq10 Length=718555 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 || |||||||| || || || ||||| ||||| ||| | || ||||| || ||| ||| Sbjct 378346 AAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTT 378287 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || || ||||| | ||||||||||| | ||| || || || ||||| || || || Sbjct 378286 AAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAA 378227 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 50000 || | ||| || | | ||||| || | || |||| | ||||||| | | | ||| Sbjct 378226 AAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCT 378167 Query 50001 AATATCCAATTTATAGCCCAATCTGCTTT 50029 ||||| ||| |||||| || || || Sbjct 378166 TGAATCCATCTTAAAGCCCATTCGGCCTT 378138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478524202950