Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738345.1_202016-09- 21] 85 sequences; 11,947,238 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12 159 5e-34 seq11 111 2e-19 seq9 107 3e-18 >seq12 Length=1076531 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 59476 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 59417 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| || ||||| || |||||||| ||| Sbjct 59416 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 59357 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||||||||| || ||||| ||||| | || |||||||| Sbjct 59356 CAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 59297 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | ||| | ||||| ||||| ||||| ||||| ||| Sbjct 59296 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGT 59249 Score = 140 bits (154), Expect = 5e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || || ||||| || |||| || ||| |||| Sbjct 59248 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCT 59189 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| |||||||||||||| || ||||| || ||| Sbjct 59188 GACACTATTGACAACGTTAAGTCGAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 59129 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| |||||||| || |||||| ||||| || || || || | Sbjct 59128 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACA-- 59071 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| | ||||| ||||| ||||| ||| Sbjct 59070 ACATCCAAAAGGAATCTACTCTTCACCTGGTGTTGAGATTGAGAGGTGGT 59021 Score = 134 bits (148), Expect = 2e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 155810 TTTATGTAATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| ||||| | ||||| || || | || || ||||| || ||||| || ||||| Sbjct 59947 TTTAACTAATAGATTATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTG 59888 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 59887 GAAGTTGAATCTTCCGATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGT 59828 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || |||||||| |||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 59827 ATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACG 59768 Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047 | || ||||| || || || ||| | || | ||| | ||| |||| ||||||| Sbjct 59767 CTGTCTGATTACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGT 59708 Query 156048 GGT 156050 ||| Sbjct 59707 GGT 59705 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 59020 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 58961 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 58960 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 58901 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||||||||| || || |||||| ||||| | || || || ||| Sbjct 58900 CAAAGATTGATTTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 58841 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || ||||| | || || || || || || ||| Sbjct 58840 AT-TCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGGT 58793 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || ||||| || || ||||| || ||| || Sbjct 59704 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 59645 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || || ||||| || |||||||| ||| Sbjct 59644 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 59585 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||||||||| ||||| ||||| || || || || | Sbjct 59584 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACA-- 59527 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || ||||| ||||| ||||| ||| Sbjct 59526 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 59477 Score = 120 bits (132), Expect = 4e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 457115 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 457174 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || || || ||||| || ||||| || || || || Sbjct 457175 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 457234 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 457235 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 457294 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 457295 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 457346 >seq11 Length=650216 Score = 111 bits (122), Expect = 2e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || |||||||| || || || || || ||||| ||| |||||| | ||| | Sbjct 600083 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 600024 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || ||||| || || || || |||||||||||||| | Sbjct 600023 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 599964 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013 ||| |||||||| | ||||| |||||| |||| || || || || ||||| || Sbjct 599963 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACAT--CCAAAAGGA 599906 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || | ||||| || || ||||||||||| ||| Sbjct 599905 ATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGT 599869 >seq9 Length=382020 Score = 107 bits (118), Expect = 3e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | || || |||||||| || || || || || ||||| ||| |||||| | |||| Sbjct 68103 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 68162 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || || ||||| || ||||| || || || || |||||||||||| Sbjct 68163 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 68222 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| |||||||| | ||||| ||||| || || || || || || ||| Sbjct 68223 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 68282 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | || | || ||||| || ||||| ||||| ||| Sbjct 68283 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGT 68321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871222386000