Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738375.1_202016-09- 21] 115 sequences; 11,860,629 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq68 122 7e-23 seq12 100 2e-16 >seq68 Length=914 Score = 122 bits (134), Expect = 7e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 || |||| ||| | ||| | ||| |||||| || | ||||| || ||||| || | Sbjct 674 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAGGTTCTA 615 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || | ||| || || ||||||||||||| ||||||||| | || | ||||||| Sbjct 614 CCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCT 555 Query 43012 TTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCG 43069 || || ||| | ||| |||||| || ||| |||||| || || || |||| | Sbjct 554 TTATC-TTGAATTTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGG 497 Query 43070 TTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||| || || ||||||||||| || ||||||||||| Sbjct 496 TTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | |||||| || Sbjct 882 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACC 823 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTT 43031 |||||||||||||| || || || | || | |||||| || || | | | ||| Sbjct 822 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-----TTGAATTTTT 768 Query 43032 GACT-----CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 |||| || ||| ||||| || || || |||| |||||||| || || || Sbjct 767 GACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTC 708 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 707 AGTGTCTTGACGAAAATTTGCAT 685 >seq12 Length=1042684 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 488773 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 488714 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 488713 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 488654 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 488653 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 488594 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 488593 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 488544 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | |||||| || Sbjct 59159 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACC 59218 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTT 43031 |||||||||||||| || || || | || | |||||| || || | | | ||| Sbjct 59219 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-----TTGAATTTTT 59273 Query 43032 GACT-----CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 |||| || ||| ||||| || || || |||| |||||||| || || || Sbjct 59274 GACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTC 59333 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 59334 AGTGTCTTGACGAAAATTTGCAT 59356 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | |||||| || Sbjct 59408 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACC 59467 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTT 43031 |||||||||||||| || || || | || | |||||| || || | | | ||| Sbjct 59468 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-----TTGAATTTTT 59522 Query 43032 GACT-----CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 |||| || ||| ||||| || || || |||| |||||||| || || || Sbjct 59523 GACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTC 59582 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 59583 AGTGTCTTGACGAAAATTTGCAT 59605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369065486670