Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738585.1_202016-09- 21] 400 sequences; 12,362,452 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq12 154 1e-32 seq133 143 2e-29 seq9 132 4e-26 seq264 125 6e-24 seq11 123 2e-23 >seq12 Length=1052065 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || ||| |||| || || || || ||| | ||| Sbjct 62135 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 62076 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||||||||||| ||||| || || || |||||| Sbjct 62075 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 62016 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || ||| |||||||| || || | || ||||| ||| Sbjct 62015 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 61956 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || || |||||||| ||| | ||| | ||||| || Sbjct 61955 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTAT 61906 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| |||| || || || || ||| | ||| Sbjct 61802 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCC 61743 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||| ||||| || || || |||||| Sbjct 61742 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 61683 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || ||| |||||||| || || | || ||||| ||| Sbjct 61682 CAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 61623 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || || |||||||| ||| | ||| | ||||| || Sbjct 61622 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTAT 61573 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | ||||| ||| ||||||| || ||||| ||| | || Sbjct 493391 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 493450 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 493451 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 493510 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || || ||||||||||| || || | ||||| |||||| Sbjct 493511 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 493570 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || |||| ||||| ||| | ||| | ||||| Sbjct 493571 ATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 493617 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| || | || || | ||||| ||| | ||| Sbjct 62363 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 62304 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||| ||||| || || || |||||| Sbjct 62303 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 62244 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || || | |||||| || || | || ||||||||| Sbjct 62243 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 62184 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| |||||||| ||||||||| Sbjct 62183 ATTCAGAAGGAGTCCACCTTACAT 62160 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| || | || || | ||||| ||| | ||| Sbjct 62612 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 62553 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||| ||||| || || || |||||| Sbjct 62552 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 62493 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || || | |||||| || || | || ||||||||| Sbjct 62492 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 62433 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| |||||||| ||||||||| Sbjct 62432 ATTCAGAAGGAGTCCACCTTACAT 62409 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| |||| || || || || ||| | || Sbjct 61346 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 61287 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||||||||||||| ||||| || || || || || Sbjct 61286 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 61227 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| |||||| | ||||| || || | || || ||||| Sbjct 61226 CAAAGATTGATTTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 61167 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | || | || ||| | ||| ||||||| Sbjct 61166 ATTCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGG 61120 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| |||| || || || || ||| | || Sbjct 60793 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 60734 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||||||||| ||||| || || || || || Sbjct 60733 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 60674 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || ||| | ||||| || || | || || ||||| Sbjct 60673 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 60614 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | || | || ||| | ||| ||||||| Sbjct 60613 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGG 60567 >seq133 Length=705 Score = 143 bits (158), Expect = 2e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || ||| |||| || || || || ||| | ||| Sbjct 243 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 184 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||||||||||| ||||| || || || |||||| Sbjct 183 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 124 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || || | |||||| || || | || ||||||||| Sbjct 123 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 64 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| |||||||| ||||||||| Sbjct 63 ATTCAGAAGGAGTCCACCTTACAT 40 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| || | || || | ||||| ||| | ||| Sbjct 699 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 640 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||| ||||| || || || |||||| Sbjct 639 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 580 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || || | |||||| || || | || ||||||||| Sbjct 579 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 520 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| |||||||| ||||||||| Sbjct 519 ATTCAGAAGGAGTCCACCTTACAT 496 >seq9 Length=443051 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||||| || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 73133 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 73192 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| ||| ||||||||||| ||||| || ||||| || ||||| | || Sbjct 73193 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 73252 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || ||| | || || |||||||||||||| Sbjct 73253 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 73312 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || || ||| | ||| | ||||| || Sbjct 73313 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 73353 >seq264 Length=489 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| |||| || || || || ||| | ||| Sbjct 267 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCC 208 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||| ||||| || || || |||||| Sbjct 207 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 148 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || || | |||||| || || | || ||||||||| Sbjct 147 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 88 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| |||||||| ||||||||| Sbjct 87 ATTCAGAAGGAGTCCACCTTACAT 64 >seq11 Length=675695 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 626923 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 626864 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || |||||||| ||||| || ||||| || ||||| | || Sbjct 626863 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 626804 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || || | || || |||||||| |||||| Sbjct 626803 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 626744 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||||| ||| | || | ||||| || Sbjct 626743 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTAT 626703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916225408000