Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738715.1_202016-09- 21] 124 sequences; 11,884,406 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 100 3e-16 seq9 82.4 8e-11 >seq12 Length=1036560 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || || | || || ||||||||||||| | Sbjct 51195 GACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACCGGCA 51254 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | | || ||||| ||||| |||||||| ||||| ||| |||||| |||| Sbjct 51255 AAGATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTTGACTTAAC 51313 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | || || ||||| | || | || ||||| ||||| || | Sbjct 51314 GTTG-TCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCT 51372 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||| ||||| Sbjct 51373 TGACGAAAATTTGCAT 51388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||| |||||||| || | Sbjct 51846 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAC 51905 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || || ||||||| | |||| | | ||||| || ||||| Sbjct 51906 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 51965 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| | |||| |||| | | ||| |||| || || | Sbjct 51966 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGT-CGATGGTATCGGAAGATTCAA 52023 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | |||||||| |||| ||| || || ||||||||||| Sbjct 52024 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 52072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | ||| || || || | | || |||||||| ||||||||||| | Sbjct 51390 CCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 51449 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || || ||||| ||||| | | | || | | |||||| |||||||| Sbjct 51450 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 51509 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||||| || ||| |||| |||| | ||| || | ||||||| || || | Sbjct 51510 ATACCTTCTTTATC-TTGAATTTTACTTTTGACGTTG-TCAATAGTGTCGGAAGATTCAA 51567 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || |||||||| || ||||| ||||| Sbjct 51568 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 51616 >seq9 Length=441424 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| ||||| || | | || || ||||||||||||||||| | Sbjct 71925 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 71866 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||| ||||| | | |||| | | |||||||| || || Sbjct 71865 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 71806 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | |||| || |||| || | ||||| | || || | Sbjct 71805 ATACCTTCCTTGTC-TTGAATCTTTGACTTGACATTG-TCAATAGTGTCAGAAGATTCAA 71748 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | || | || | || |||||||||| ||| || |||||| Sbjct 71747 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 71707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261630793280