Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001738835.1_202016-09- 21] 725 sequences; 12,492,134 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq301 150 1e-31 seq12 150 1e-31 seq11 95.1 9e-15 >seq301 Length=506 Score = 150 bits (166), Expect = 1e-31 Identities = 178/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| |||||| || ||||||||||||||||| Sbjct 273 TTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTA 332 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || | | |||| || |||||||| |||||||||||||| | ||| |||| Sbjct 333 GTCAGACAAGGTTCTAC-CGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGAT 391 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCG 44281 ||| ||| | ||||||||| ||| || ||| ||| || ||| | || ||||||| | Sbjct 392 CTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTT-AACGTTATCGATCGTGTCGGAG 450 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | || || || || || || | ||||| || ||||| ||||| Sbjct 451 GATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 506 Score = 131 bits (144), Expect = 1e-25 Identities = 175/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| |||||| || ||||||||||||||||| Sbjct 45 TTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTA 104 Query 44164 ATC-GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || | | |||| ||||| ||||| |||||||| ||||| | || |||| Sbjct 105 GTCAGACAAGGT-TCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGAT 163 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTT-CTGCTTCAATGTT-CCTATGGTGTCGGC 44280 ||| ||| | ||||||||| || || || || || | ||| | || ||||||| Sbjct 164 CTGGAGGAATACCTTCCTTGTCTTGAATTTTACT--TTTGACGTTGTCAATAGTGTCGGA 221 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | || || ||||| || || || || || ||||| |||||||| Sbjct 222 AGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 278 >seq12 Length=1059086 Score = 150 bits (166), Expect = 1e-31 Identities = 178/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| |||||| || ||||||||||||||||| Sbjct 64413 TTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTA 64472 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || | | |||| || |||||||| |||||||||||||| | ||| |||| Sbjct 64473 GTCAGACAAGGTTCTAC-CGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGAT 64531 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCG 44281 ||| ||| | ||||||||| ||| || ||| ||| || ||| | || ||||||| | Sbjct 64532 CTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTT-AACGTTATCGATCGTGTCGGAG 64590 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | || || || || || || | ||||| || ||||| ||||| Sbjct 64591 GATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 64646 Score = 150 bits (166), Expect = 1e-31 Identities = 178/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| |||||| || ||||||||||||||||| Sbjct 65139 TTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTA 65198 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || | | |||| || |||||||| |||||||||||||| | ||| |||| Sbjct 65199 GTCAGACAAGGTTCTAC-CGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGAT 65257 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCG 44281 ||| ||| | ||||||||| ||| || ||| ||| || ||| | || ||||||| | Sbjct 65258 CTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTT-AACGTTATCGATCGTGTCGGAG 65316 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | || || || || || || | ||||| || ||||| ||||| Sbjct 65317 GATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 65372 Score = 114 bits (126), Expect = 9e-21 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || || | ||| || || | ||| |||||| || ||||||||||| Sbjct 65370 CATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATC 65429 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || | |||| || |||||||| |||||||||||||| | || ||||||| Sbjct 65430 AGACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGG 65489 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 ||| | ||||||||| || || ||| ||| || ||| | ||||| |||| |||| Sbjct 65490 AGGGATACCTTCCTTGTCTTGAATTTTCGACTT-AACGTTGTCGATGGTATCGGAAGATT 65548 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | || |||| || || || || || || | ||||| ||||| || ||||| || Sbjct 65549 CAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAAT 65603 Score = 109 bits (120), Expect = 4e-19 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| || | ||| ||| || || ||||| || Sbjct 64826 TTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATA 64885 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || | |||| ||||| ||||| || ||||| ||||| | ||| ||||| Sbjct 64886 ATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATC 64945 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTT-CTGCTTCAATGTT-CCTATGGTGTCGGCG 44281 | ||| | |||||| || || ||||| || || | ||| | || ||||||| Sbjct 64946 CGGAGGGATACCTTCTTTATCTTGAATCTTACT--TTTGACGTTGTCAATAGTGTCGGAA 65003 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | || || ||||| || || || || || ||||| |||||||| Sbjct 65004 GATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 65059 Score = 109 bits (120), Expect = 4e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| |||||| |||| ||| || || ||||||||||||||||| |||| Sbjct 494873 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 494814 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| | | || |||| ||||| || ||||||||||| | || || || | | Sbjct 494813 AAAGTT--CTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 494756 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | ||||||||| || ||||| ||| || ||| | || ||||| | ||||| Sbjct 494755 GAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGT--CAATAGTGTCAGAAGATTC 494698 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 494697 AACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 494647 >seq11 Length=653068 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || ||||| | |||||| |||| || | ||| ||||||||||||||||| || Sbjct 625749 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 625808 Query 44168 G--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | ||||| | |||| |||| ||||| || ||||||||||| | || || || | Sbjct 625809 GATAGAGTT--CTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAG 625866 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283 || | ||||||||| || ||||| ||| || ||| | |||||||| | || Sbjct 625867 GTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGT--CAATGGTGTCAGAAGA 625924 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 ||| || |||| || || ||||| || || | ||||| |||||| Sbjct 625925 TTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 625970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987219147325