Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739235.1_202016-09- 21] 533 sequences; 12,479,185 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12 170 2e-37 seq9 109 5e-19 seq11 104 2e-17 >seq12 Length=1059319 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | ||||||||||| || || | || || ||| || || Sbjct 67776 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 67717 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 67716 GACACGATCGATAACGTTAAGTCGAAA-ATCCAGGACAAGGAAGGTATCCCTCCAGATCA 67658 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||||||| || ||||| || || |||| | |||| || || || Sbjct 67657 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 67598 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || || |||||||||||| ||||| | || || Sbjct 67597 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 67550 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | || || |||||||||| |||||||| || ||||| ||| | | Sbjct 500341 GATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTC 500400 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 500401 TGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCA 500460 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||||||||| || || || |||| ||| |||| |||| || || || Sbjct 500461 ACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 500520 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||| ||||||||||| || ||||||||||| ||| ||||| | || || || Sbjct 500521 CATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTGG 500571 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || ||||| ||||| || || || || ||| | | Sbjct 67548 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 67489 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| ||||| || |||||||| ||||| || ||||| ||||| Sbjct 67488 GACACTATTGACAACGTTAAGTCAAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGATCA 67430 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||||||||| || || ||||| || |||| |||| |||||||| Sbjct 67429 ACAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAA 67370 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || | || ||||||||| ||||| | || || Sbjct 67369 CATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 67322 Score = 127 bits (140), Expect = 2e-24 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | ||||||||||| || || | ||||| ||| | || Sbjct 68004 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 67945 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | ||| || |||||||| ||||| || ||||| ||||| Sbjct 67944 GATACCATCGACAACGTTAAGTCGAAA-ATTCAAGACAAGGAAGGTATCCCTCCAGATCA 67886 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||||||||| || ||||| || || |||| |||| ||||| || Sbjct 67885 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAA 67826 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||| ||||| || || |||| |||| Sbjct 67825 CATTCAGAAGGAGTCCACCTTACATCTTG 67797 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 24743 ACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAA 24801 || || || || ||| | | ||||| | || |||| ||| ||||| || |||||||| Sbjct 67161 ACCCTAGAGGTTGAATCTTCTGACACTATTGACAACGTTAAGTCAAAA-ATTCAAGACAA 67103 Query 24802 AGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTC 24861 ||||| || ||||| || || ||| | |||||||||||||| ||||| || || ||| Sbjct 67102 GGAAGGTATTCCTCCAGACCAGCAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGG 67043 Query 24862 GAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||| |||| || || || ||||||||||| || || || ||| | || ||| | || Sbjct 67042 TAGAACGCTGTCGGACTACAATATTCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTT 66983 Query 24922 GCGCGGAGG 24930 | | || || Sbjct 66982 GAGGGGTGG 66974 >seq9 Length=440459 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || || || | ||||| ||| | | ||||| | || | || || | Sbjct 70750 ACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCA 70809 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| ||||| || || || || |||||| | ||||||||||| || || Sbjct 70810 AAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 70869 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| || |||| | |||| || || ||||||||||| ||||| || | ||| Sbjct 70870 CAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAATCCACTTTGCAC 70929 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| ||||| | || || Sbjct 70930 TTAGTCTTGAGATTGAGAGGTGG 70952 >seq11 Length=658116 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24717 TTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAA 24776 |||| || | || ||||| || || || | ||||| ||| | | ||||| | || | Sbjct 627377 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 627318 Query 24777 CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCT 24836 || || |||||||||||||| ||||| || || || || |||||| | ||||||| Sbjct 627317 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 627258 Query 24837 TTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896 |||| || || || |||| || |||| | || || || ||||| |||||||||| Sbjct 627257 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAAT 627198 Query 24897 CGACACTACACTTGGTGTTGCGATT 24921 | || |||| ||||| ||| |||| Sbjct 627197 CCACTTTACATTTGGTCTTGAGATT 627173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894602557240