Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739595.1_202016-09- 21] 334 sequences; 12,113,438 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12 114 3e-20 seq333 104 6e-17 >seq12 Length=1064606 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | |||||||||| || || || || || Sbjct 63834 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAA 63893 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||||||| ||||| ||| ||||| || ||||||||||||| || || Sbjct 63894 GATCAACCTCTGTTGA---TCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAAC 63950 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| ||||| || || | ||||| || || ||||||| |||||| Sbjct 63951 GTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTT 64010 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 64011 AACAAAGATCTGCAT 64025 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || || || || ||||| | ||| || || || || || || || | Sbjct 64027 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 64086 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 ||||| | |||||||||| || || || || ||||||| | |||||| ||||| Sbjct 64087 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGA---TCTGGA 64143 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || || ||||||| || ||||| || || | |||| ||||| Sbjct 64144 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 64203 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| | || || || || ||||||| |||||||||||| |||||||| || Sbjct 64204 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAAT 64256 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | || ||||| ||||| || || || || Sbjct 496202 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAA 496143 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| | ||| || ||||| || || ||||| || | || || || Sbjct 496142 GATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 496083 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| || || || ||||| ||||| | ||||||||| Sbjct 496082 GTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 496023 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 496022 GAAAATTTGCAT 496011 >seq333 Length=761 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||| ||| || || || || Sbjct 444 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAA 385 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||||| ||||| ||||||||||| || || || ||| ||||| Sbjct 384 AATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTT 325 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || ||| ||| ||||| || || || || || |||||||| || ||||| ||||| Sbjct 324 GTCAATATTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGAC 265 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 264 GAAAATTTGCAT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649351816452