Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739665.1_202016-09- 21] 317 sequences; 12,021,606 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12 120 5e-22 seq11 107 3e-18 seq9 89.7 8e-13 >seq12 Length=1033082 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||| || ||||| ||||| || |||||||| || Sbjct 63176 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 63235 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || | ||| || || ||||||||||||||||| ||||| |||||| Sbjct 63236 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 63295 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||| || Sbjct 63296 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 63355 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || || ||||||| ||||| | ||| |||||||| Sbjct 63356 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 63402 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || ||||| || | ||||||||| || || || || || || Sbjct 62948 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 63007 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||| ||| || ||||||||||||||||| || ||||||||||| Sbjct 63008 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 63067 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 63068 ATACCTTCTTTATCTTG 63084 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || ||||| |||| ||||||||| || || || || || || Sbjct 464512 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 464453 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || ||||| || |||||||| ||||||||||| || || || ||| Sbjct 464452 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 464393 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||| ||| Sbjct 464392 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 464333 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || || || || ||||| ||||| || || | ||| |||||||| || Sbjct 464332 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 464283 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || | || || || | || | ||| || || ||| || ||||| || || || Sbjct 62720 CCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCCGA 62778 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| |||| |||||| || |||||||||||||||||||| || ||||| Sbjct 62779 CAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGG 62838 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 62839 AATACCTTCCTTGTCTTG 62856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/237 (67%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || |||| || | |||||| || || || || || || ||||| || Sbjct 63632 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 63691 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || |||| || || || ||||| ||||||||||| ||||| ||||| Sbjct 63692 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 63751 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||||| ||| ||| ||| Sbjct 63752 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 63811 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT--TTTATTAG 146285 || | ||| || |||||||| || || || || | ||| || ||||| | |||||| Sbjct 63812 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 63868 >seq11 Length=644582 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||||||||| ||||| || || || || || || Sbjct 617298 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 617357 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 617358 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 617417 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 617418 ATACCTTCCTTGTCTTG 617434 >seq9 Length=433385 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || || || ||||| |||||||| || || || || || Sbjct 74183 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 74124 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 74123 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 74064 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 74063 ATACCTTCCTTGTCTTG 74047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743523453776640