Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739735.1_202016-09- 21] 478 sequences; 12,268,615 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12 140 5e-28 seq11 111 2e-19 seq9 107 3e-18 >seq12 Length=1057594 Score = 140 bits (154), Expect = 5e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 62675 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 62616 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 62615 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 62556 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| |||||||||||| || |||||| ||||| | || || || ||| Sbjct 62555 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 62496 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || ||||| | || || || || || || ||| Sbjct 62495 AT-TCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGT 62448 Score = 134 bits (148), Expect = 2e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 155810 TTTATGTAATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| ||||| | ||||| || || | || || ||||| || ||||| || ||||| Sbjct 63389 TTTAACTAATAGATTATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTG 63330 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 63329 GAAGTTGAATCTTCCGATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGT 63270 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || |||||||| |||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 63269 ATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACG 63210 Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047 | || ||||| || || || ||| | || | ||| | ||| |||| ||||||| Sbjct 63209 CTGTCTGATTACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGT 63150 Query 156048 GGT 156050 ||| Sbjct 63149 GGT 63147 Score = 129 bits (142), Expect = 9e-25 Identities = 142/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 155866 TAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAG 155925 |||| || ||| ||| || | |||| ||||| |||| ||| || ||||||||||||| Sbjct 62860 TAGAGGTTGAATCTTCCGACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAG 62801 Query 155926 GCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAA 155985 | || ||||| || ||||| |||||||||| ||| |||||||| || |||||| |||| Sbjct 62800 GTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAA 62741 Query 155986 CTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAG 156043 | || || || || | | ||||||| || | || ||||| || ||||| ||||| || Sbjct 62740 CCTTGTCTGACTACA--ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAG 62683 Query 156044 AGGCGGT 156050 ||| ||| Sbjct 62682 AGGTGGT 62676 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || ||||| || || ||||| || ||| || Sbjct 63146 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 63087 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || || ||||| || |||||||| ||| Sbjct 63086 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 63027 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||||||||| ||||| ||||| || || || || | Sbjct 63026 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACA-- 62969 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || ||||| ||||| ||||| ||| Sbjct 62968 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 62919 Score = 120 bits (132), Expect = 4e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 494690 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 494749 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || || || ||||| || ||||| || || || || Sbjct 494750 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 494809 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 494810 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 494869 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 494870 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 494921 >seq11 Length=658267 Score = 111 bits (122), Expect = 2e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || |||||||| || || || || || ||||| ||| |||||| | ||| | Sbjct 630835 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 630776 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || ||||| || || || || |||||||||||||| | Sbjct 630775 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 630716 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013 ||| |||||||| | ||||| |||||| |||| || || || || ||||| || Sbjct 630715 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACAT--CCAAAAGGA 630658 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || | ||||| || || ||||||||||| ||| Sbjct 630657 ATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGT 630621 >seq9 Length=451053 Score = 107 bits (118), Expect = 3e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | || || |||||||| || || || || || ||||| ||| |||||| | |||| Sbjct 77628 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 77687 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || || ||||| || ||||| || || || || |||||||||||| Sbjct 77688 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 77747 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| |||||||| | ||||| ||||| || || || || || || ||| Sbjct 77748 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 77807 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | || | || ||||| || ||||| ||||| ||| Sbjct 77808 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGT 77846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731867627064800