Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739815.1_202016-09- 21] 438 sequences; 12,182,130 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq12 141 7e-29 seq9 118 8e-22 seq11 111 1e-19 >seq12 Length=1056182 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || ||||| | ||||| ||||| || ||||| ||||| Sbjct 64247 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 64306 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| || || || | ||||| | ||||| || ||| Sbjct 64307 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 64366 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||||| || | || ||||| ||| | ||| || Sbjct 64367 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 64426 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 64427 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 64474 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || ||||| ||||| || ||||| |||||||| || | Sbjct 63779 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA--G 63836 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | ||||||| ||| || ||||| | ||||| | |||||| || | Sbjct 63837 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 63896 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||| || ||||| || | || ||||| ||| | ||| | Sbjct 63897 GGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 63956 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 63957 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 64006 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || || ||||| || ||||| |||||||| ||| Sbjct 496178 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 496119 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||| ||||| || ||||| | ||||| | |||||||| |||| Sbjct 496118 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 496059 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || ||||| || | ||| || Sbjct 496058 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 495999 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | |||||| || ||||| || | ||| || || ||||||||||| || Sbjct 495998 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 495949 Score = 120 bits (132), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATG-AAGG-----------GTAGAATCTTTTTGTATG 14997 ||||||| |||||| || || ||||| || | ||||| ||||| || ||| Sbjct 64007 CCACCTCTCAATCTCAACACCAAATGCAACGTNNNNNNNNNNGTAGACTCTTTCTGAATG 64066 Query 14998 TTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGT 15057 || ||||| || |||| ||||||| | ||| || || || | ||||| | ||| Sbjct 64067 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGT 64126 Query 15058 TGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCG 15117 || || ||||| ||||||||||| |||||| ||||| || | || ||||| ||| Sbjct 64127 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCG 64186 Query 15118 CTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||| || |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 64187 GAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 64246 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| || || || | ||||| || || || ||||| || ||||| || Sbjct 63551 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 63610 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||||| ||| || || || | ||||| | || ||||| ||| Sbjct 63611 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 63670 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || ||||| || | ||| || Sbjct 63671 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 63730 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || ||||||||||| || || ||||||||||||||| Sbjct 63731 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCATA 63778 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || | ||| | ||| || || || || ||||||||||| Sbjct 64821 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 64880 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||||| || || || || | ||||| | ||||| || || Sbjct 64881 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 64940 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || |||||| | ||| || Sbjct 64941 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 65000 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| |||| ||| || || ||||| |||||| Sbjct 65001 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATA 65048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || | ||| | ||| || || || || ||||||||||| Sbjct 64593 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 64652 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||||| || || || || | ||||| | ||||| || || Sbjct 64653 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 64712 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| || || | || || || ||| ||| || Sbjct 64713 ATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACC 64772 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||||||||| |||| ||| || ||||| || |||||| Sbjct 64773 TCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCATA 64820 >seq9 Length=442811 Score = 118 bits (130), Expect = 8e-22 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || ||||| || | || || |||||||| |||||||| || | Sbjct 75665 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA--G 75608 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| ||||| || ||||| | ||||| | |||||||| || Sbjct 75607 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 75548 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || || ||| | || ||||| || | ||| | Sbjct 75547 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 75488 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 | || || || ||||| ||||| |||| ||| || |||||| Sbjct 75487 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 75447 >seq11 Length=647312 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || || ||||| | || || || ||||| |||||||| || Sbjct 619956 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 620015 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| ||||| || ||||| | ||||| | |||||||| ||| Sbjct 620016 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 620075 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || || || | ||| || Sbjct 620076 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACT 620135 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 || || || ||||| ||||| |||| ||| || || || | | || | ||| ||||| | Sbjct 620136 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAGCTGTACAAAATTGGAATAAGT 620195 Query 15190 T 15190 | Sbjct 620196 T 620196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390092196830