Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739825.1_202016-09- 21] 443 sequences; 12,174,042 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq12 152 5e-32 seq70 122 8e-23 seq9 118 1e-21 seq186 116 3e-21 seq11 100 3e-16 seq248 91.5 1e-13 >seq12 Length=1051691 Score = 152 bits (168), Expect = 5e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| |||||||||||| | ||||||||||||||| | | Sbjct 63147 AAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATG 63206 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | || || ||||| || ||| ||||||| || || || Sbjct 63207 TTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGT 63266 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||||||||| |||||||| ||||| | ||||| | ||| ||| ||| ||||| Sbjct 63267 TGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCG 63326 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| || || | ||| || |||||||||||||| Sbjct 63327 GAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 63385 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| |||||||| | ||||||||||||||| | ||| || ||| | Sbjct 496213 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 496154 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| || || || ||||||| |||||||| || || || ||| Sbjct 496153 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 496094 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || | |||||| | | | |||||||| || || Sbjct 496093 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 496034 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || | ||| || || || || ||||| Sbjct 496033 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 495987 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| | ||| || | ||| | ||| || |||||||| | || || || | Sbjct 62931 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 62990 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || || || ||| |||| || ||||||||||| ||||||||| Sbjct 62991 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 63050 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | |||||| | ||| ||| | | | |||||| | || || Sbjct 63051 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCGGAAGATTCAACC 63110 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || |||||||| || || || ||||| Sbjct 63111 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 63157 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || || || || ||||| || | ||| ||||| || || | || || | Sbjct 63406 CAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTA 63465 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| ||||||| |||||||| ||||||||||| |||||||| ||||| | || Sbjct 63466 GCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAA 63525 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 |||| | ||| ||| | ||| || || | || || || | || |||||||| | Sbjct 63526 TTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTAC 63585 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| || || || |||||||| Sbjct 63586 CGGTCAAAGTCTTGACGAAAATCTGCAT 63613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| | ||| || | ||| | ||| || |||||||| | || || || | Sbjct 62682 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 62741 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || || || ||| |||| || ||||||||||| ||||||||| Sbjct 62742 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 62801 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 |||||||| ||||| | |||||| | ||| ||| Sbjct 62802 ATACCTTCCTTGTCTTGAATTTTCGACTTAACG 62834 >seq70 Length=593 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||||||||| |||||||||||| | ||||||||||||||| | Sbjct 264 AAAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGAT 323 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || || | ||| || || || || || |||| || ||||| || Sbjct 324 GTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTG 383 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| ||||| ||||||||||| || | ||| || |||||| | | | |||||| Sbjct 384 TTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTC 443 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 444 GGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 503 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| | ||| || | ||| | ||| || |||||||| | || || || | Sbjct 49 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 108 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || || || ||| |||| || ||||||||||| ||||||||| Sbjct 109 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 168 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | |||||| | ||| ||| | | | |||||||| || || Sbjct 169 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 228 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || || || || ||||| || ||||| Sbjct 229 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 275 >seq9 Length=439393 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || ||||||||||| ||||| ||||| | ||| || || | Sbjct 77377 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 77318 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| || || || ||||||| |||||||| || || || || Sbjct 77317 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 77258 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| |||| |||||| | | | |||||||| || || Sbjct 77257 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 77198 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || | |||||||| || ||||| | ||| || ||||| Sbjct 77197 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 77160 >seq186 Length=467 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||| ||||| ||||| || || || | | Sbjct 329 AAAATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATG 270 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || || | || ||||| || || || |||| || ||||| || Sbjct 269 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAATCTCTGT 210 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| ||||| ||||||||||| || | ||| || |||||| | | | |||||| Sbjct 209 TGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCG 150 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 149 GAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 91 >seq11 Length=648892 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||| ||||| || ||||| ||||||||||| | ||| || | | Sbjct 621585 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGT--CAG 621642 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | || |||| || || || ||||||| |||||||| || || || | Sbjct 621643 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 621702 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||| ||||| | || || | |||||| | | | ||||||| || | Sbjct 621703 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAA 621762 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || | |||||||| || ||||| | ||| || || ||| Sbjct 621763 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 621803 >seq248 Length=442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| | ||| || | ||| | ||| || |||||||| | || || || | Sbjct 287 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 346 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || || || ||| |||| || ||||||||||| ||||||||| Sbjct 347 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 406 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 |||||||| ||||| | |||||| | ||| ||| Sbjct 407 ATACCTTCCTTGTCTTGAATTTTCGACTTAACG 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288717587480