Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739935.1_202016-09- 21] 422 sequences; 12,322,823 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 seq407 104 1e-17 >seq12 Length=1042995 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||||||||| || ||||| |||||||| ||||| || || || Sbjct 59588 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 59647 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| || || ||||||||||| || || | |||||| || || || Sbjct 59648 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 59707 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | |||||| || || ||||| | || || Sbjct 59708 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 59766 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||||||||| || || || ||||| |||||||| Sbjct 59767 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 59814 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| | ||| | ||| |||||| |||||||| ||||| || Sbjct 59816 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 59875 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| || || ||||||||||| || || | ||||| || || || Sbjct 59876 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 59935 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | |||||| | || || || || || Sbjct 59936 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAAC 59994 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||||||||| || || || || ||||||||||| Sbjct 59995 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 60042 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||||||||| || || || || || |||| | ||||| ||||| Sbjct 59384 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGC 59443 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || || | || ||||| || || | || ||||||||| ||| ||| Sbjct 59444 TTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCT-TGAATTTT 59502 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | |||||| | ||| ||||| || || || | |||||| || ||||| || Sbjct 59503 CGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 59562 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || |||||||| ||||| Sbjct 59563 CAGTGTCTTGACAAAAATTTGCAT 59586 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || ||||| |||||||| ||||| || || || Sbjct 490752 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 490693 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||| ||||| ||||| || || | |||||||| || || Sbjct 490692 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 490633 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | ||| ||||| || || Sbjct 490632 ATACCTTCCTTGTCTTGGATCTTG-GACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 490574 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| ||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 490573 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 490522 >seq407 Length=958 Score = 104 bits (114), Expect = 1e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||||||||| || || || || || |||| | ||||| |||||| Sbjct 316 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGT 375 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || || | || ||||| || || | || ||||||||| ||| ||| Sbjct 376 TTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCT-TGAATTTT 434 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || |||||| | ||| ||||| || || || | |||||| || ||||| || Sbjct 435 TGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 494 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| ||||| Sbjct 495 CAGTGTCTTGACGAAAATTTGCAT 518 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | |||||||||||| | || ||| || |||||||||||||| || Sbjct 748 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 807 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| ||||||||||| || || | ||||| || || || Sbjct 808 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 867 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| |||| ||| | ||| ||||| || || Sbjct 868 ATACCTTCCTTGTCT-TGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 926 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTT 34690 || | |||||| || || || |||| |||| Sbjct 927 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTT 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727981306326