Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001739995.1_202016-09- 21] 495 sequences; 12,272,740 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 118 3e-21 seq5 111 4e-19 seq4 89.7 1e-12 >seq9 Length=430135 Score = 118 bits (130), Expect = 3e-21 Identities = 394/607 (65%), Gaps = 7/607 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| || ||||| || || || ||| | || || || | | || || || | Sbjct 233171 TATTTCGGATTCAAGACACTGGAGCGTTCGTACTTGCTAAGACTGAACGGTGAAGTGGCA 233112 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||||||||| || || | | ||||| ||| | ||||| ||||| ||||| || Sbjct 233111 GAACGTCCTCAGCATTTGGTAATGCGTGTGGCGCTAGGTATCCATGGTAGCGATATCGAA 233052 Query 110424 GCTGTTATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 |||| | | |||| || | || || || | | | | ||| ||| | || || Sbjct 233051 TCTGTGCTGAAGACTTATAATTTGATGTCGTTAAGATACTTC-ACTCACGCTTCCCCAAC 232993 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTA 110541 |||| ||||| || || ||| || |||| || |||||| | | || | Sbjct 232992 TTTATTCAACGCTGGTACGCCACATCCTCAAATGTCTTCATG-TTTCTTAATTGCCATGA 232934 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | ||||| ||||| ||||||||||||||| || | |||||| |||| | ||||| |||| Sbjct 232933 AGGATGACTCTATCGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAAA 232874 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 | || || ||||| |||| | | | || || || | ||| | ||||||| Sbjct 232873 CTGCAGGTGGTGTTGGTCTTCATATCAACAACATCCGTTCCACAGGTTCTTATATCGCTG 232814 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | || ||| |||||| || | |||| ||| | | || ||||| | ||||| Sbjct 232813 GTACCAACGGTACTTCAAACGGGTTGATTCCTATGATTCGTGTTTTCAATAATACTGCCC 232754 Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| | || |||||| |||||| ||| | || || | | | || || | Sbjct 232753 GTTATGTGGACCAGGGTGGTAACAAGAGACCTGGTGCCTTCGCCCTTTTCTTGGAGCCAT 232694 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||| ||||||| || || || | || | | |||| || || |||||| Sbjct 232693 GGCATGCAGATATCTTCGACTTTGTCGATATCAGAAAAACACATGGTAAGGAAGAAATTC 232634 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | ||| | ||||| || ||| | ||||| | ||| | ||||||||||||||||||| Sbjct 232633 GTGCAAGAGATTTGTTCCCTGCTCTATGGATCCCTGATCTTTTCATGAAACGTGTTCAAG 232574 Query 110899 AAAATGG 110905 | |||| Sbjct 232573 AGGATGG 232567 >seq5 Length=567320 Score = 111 bits (122), Expect = 4e-19 Identities = 550/866 (64%), Gaps = 20/866 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| |||||| | |||||| |||||||||| | |||| || | | Sbjct 298175 TATTTTGGTTTTAAAACTTTGGAACGTTCTTATTTACTAAGAATCAACGGTCAAGTGGCC 298234 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||| ||| ||||| | || | | || || | || || || || ||||| | Sbjct 298235 GAACATCCACAACATTTAATTATGAGAGTCGCACTAGGCATCCACGGTAGAGATATCGAG 298294 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| | | ||| ||| | | | | ||| | || ||| || |||| || Sbjct 298295 GCTGCTTTAGAAACGTATAACTTGATGTCTCTAAAATATTTTACTCACGCCTCTCCAACG 298354 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 | || || || || ||| | ||| || | ||||| |||||| | | || || Sbjct 298355 TTGTTCAATGCCGGTACTCCAAAACCTCAAATGTCCTCTTG-TTTCTTGGTTGCCATGAA 298413 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || ||||| || || ||||| || | | || ||| |||| | ||||| |||| Sbjct 298414 GGAGGACTCTATCGAGGGGATTTACGACACCTTGAAGGAATGTGCTTTGATTTCCAAAAC 298473 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | || | ||| | ||||| |||| || | | || || Sbjct 298474 TGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTCAACTGGTTCTTACATTGCTGG 298533 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | || | |||| ||| | | || ||||| |||| || Sbjct 298534 TACAAACGGTACTTCTAACGGTTTAATTCCTATGATTCGTGTTTTCAATAACACCGCCCG 298593 Query 110723 ATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | || |||||||| | || ||| | ||||| | || || ||||| || Sbjct 298594 TTATGTTGACCAGGGTGGTAATAAAAGACCTGGTGCGTTTGCCCTTTACCTGGAACCATG 298653 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| | ||||||||||| || | || || | || || || || | |||| ||| Sbjct 298654 GCATGCTGATATATTTGATTTTATTGATATTAGGAAGAACCACGG---TAAAGAGGAAAT 298710 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| || ||| | |||||| | ||| | |||||||| ||||| | Sbjct 298711 TCGTGCAAGAGATTTGTTCCCTGCTCTATGGATTCCTGATCTTTTCATGAAGCGTGTCGA 298770 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCC-TCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||||||||| | ||| | | | | ||| |||| |||||||| || ||| | Sbjct 298771 AGAAAATGGGACCTGGACATTATTCTCTCCAACATC-AGCTCCTGGTTTAAGCGATTGTT 298829 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCG-CAA 111013 | || | |||||||| | || || || || |||||||| | | | | | | Sbjct 298830 ACGGTGACGAGTTTGAGGCTCTATATACCCGCTACGAGAAAGAAGGTCGTGGTAAGACTA 298889 Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073 ||| ||| ||| || | |||| || | ||| | ||| ||||||||| || Sbjct 298890 TCAA-----AGCCCAAAAATTATGGTATTCCATTTTGGAAGCTCAAACTGAAACTGGTAC 298944 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 |||| || | || || ||| | ||| | ||||||||||||| || ||||| Sbjct 298945 ACCTTTCGTTGTTTACAAGGATGCTTGTAACAGAAAATCTAATCAAAAAAACTTAGGTGT 299004 Query 111134 AATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||||| || || ||||||| Sbjct 299005 CATCAAGTCATCAAACTTATGCTGTG 299030 >seq4 Length=1503394 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 || |||| |||| |||| || | ||||||||||| |||||||| || | || || Sbjct 213734 TTGCAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGTCAACCA--CAAGCTC 213677 Query 304944 CTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTC 305003 ||||| || ||| | || | || |||| | || | || ||||||||||||| Sbjct 213676 TTCAAAAGTCCGGCCGTCCCGTTAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGTC 213617 Query 305004 GTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAAT 305058 |||| |||||||| ||||||| || ||||| |||||| ||||||| ||| || Sbjct 213616 GTATCAGAGGTAATTTAATGGGTAAGCGTGTGGATTTTTCGGCAAGAACTGTTAT 213562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805273010695