Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740115.1_202016-09-
21] 525 sequences; 12,314,708 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq366 116 2e-21
seq274 116 2e-21
seq208 111 1e-19
seq12 111 1e-19
>seq366
Length=395
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | |||||||||||| | || ||| || |||||||||||||| ||
Sbjct 97 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 156
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| ||||||| ||||| ||||||||||| || || | ||||| || || ||
Sbjct 157 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 216
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| ||| |||| ||| | ||| ||||| || ||
Sbjct 217 ATACCTTCCTTGTCT-TGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 275
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | |||||| || || || |||| ||||| || ||||| |||||
Sbjct 276 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 323
>seq274
Length=460
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | ||||||||| || ||||| |||||||| ||||| || || ||
Sbjct 140 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 199
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||| ||||||| ||||| ||||||||||| || || | |||||| || || ||
Sbjct 200 AAGGTTCTACCGTCTTCTAGTTGCTTACCGGCAAAAATCAATCTCTGTTGATCTGGAGGG 259
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| ||| | |||||| || || ||||| | || ||
Sbjct 260 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 318
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || ||||||||||| || || || ||||| ||||||||
Sbjct 319 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 366
>seq208
Length=489
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | ||||||||| || ||||| |||||||| ||||| || || ||
Sbjct 321 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 262
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||| ||||||| || || ||||||||||| || || | |||||| || || ||
Sbjct 261 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 202
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| ||| | |||||| || || ||||| | || ||
Sbjct 201 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 143
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || ||||||||||| || || || ||||| ||||||||
Sbjct 142 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 95
>seq12
Length=1066958
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| || | | ||| | ||| | ||| |||||| |||||||| ||||| ||
Sbjct 64465 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 64524
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| ||||||| || || ||||||||||| || || | ||||| || || ||
Sbjct 64525 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 64584
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||| ||| | |||||| | || || || || ||
Sbjct 64585 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAAC 64643
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||||| ||||||||||| || || || || |||||||||||
Sbjct 64644 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 64691
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | ||||||||| || ||||| |||||||| ||||| || || ||
Sbjct 63489 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 63548
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||| ||||||| || | ||||||||||| || || | |||||| || || ||
Sbjct 63549 AAGGTTCTACCGTCTTCTAGCCGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 63608
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| ||| | |||||| || || ||||| | || ||
Sbjct 63609 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 63667
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || ||||||||||| || || || ||||| ||||||||
Sbjct 63668 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 63715
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | ||||||||| || ||||| |||||||| ||||| || || ||
Sbjct 63988 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 64047
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||| | ||||| ||||| ||||| ||||| || || | |||||| || || ||
Sbjct 64048 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCTGGAGGG 64107
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| ||| | |||||| || || ||||| | || ||
Sbjct 64108 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 64166
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || ||||||||||| || || || ||||| ||||||||
Sbjct 64167 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 64214
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|| |||||| |||||||||||| || || || || || |||| | ||||| |||||
Sbjct 63285 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGC 63344
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
||||||||||| || || | || ||||| || || | || ||||||||| ||| |||
Sbjct 63345 TTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCT-TGAATTTT 63403
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
| |||||| | ||| ||||| || || || | |||||| || ||||| ||
Sbjct 63404 CGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 63463
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| || || |||||||| |||||
Sbjct 63464 CAGTGTCTTGACAAAAATTTGCAT 63487
Score = 100 bits (110), Expect = 2e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | ||| ||||| || ||||| |||||||| ||||| || || ||
Sbjct 495998 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 495939
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||| | ||||| | ||| ||||| ||||| || || | |||||||| || ||
Sbjct 495938 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 495879
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| |||||| | || || | ||| ||||| || ||
Sbjct 495878 ATACCTTCCTTGTCTTGGATCTTG-GACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 495820
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| ||| || || ||||||||||| || || || ||||| ||||| |||
Sbjct 495819 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 495768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727586222325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |