Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740175.1_202016-09- 21] 497 sequences; 12,252,896 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 118 3e-21 seq5 113 1e-19 seq4 89.7 1e-12 >seq9 Length=447418 Score = 118 bits (130), Expect = 3e-21 Identities = 394/607 (65%), Gaps = 7/607 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| || ||||| || || || ||| | || || || | | || || || | Sbjct 247976 TATTTCGGATTCAAGACACTGGAGCGTTCGTACTTGCTAAGACTGAACGGTGAAGTGGCA 247917 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||||||||| || || | | ||||| ||| | ||||| ||||| ||||| || Sbjct 247916 GAACGTCCTCAGCATTTGGTAATGCGTGTGGCGCTAGGTATCCATGGTAGCGATATCGAA 247857 Query 110424 GCTGTTATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 |||| | | |||| || | || || || | | | | ||| ||| | || || Sbjct 247856 TCTGTGCTGAAGACTTATAATTTGATGTCGTTAAGATACTTC-ACTCACGCTTCCCCAAC 247798 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTA 110541 |||| ||||| || || ||| || |||| || |||||| | | || | Sbjct 247797 TTTATTCAACGCTGGTACGCCACATCCTCAAATGTCTTCATG-TTTCTTAATTGCCATGA 247739 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | ||||| ||||| ||||||||||||||| || | |||||| |||| | ||||| |||| Sbjct 247738 AGGATGACTCTATCGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAAA 247679 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 | || || ||||| |||| | | | || || || | ||| | ||||||| Sbjct 247678 CTGCAGGTGGTGTTGGTCTTCATATCAACAACATCCGTTCCACAGGTTCTTATATCGCTG 247619 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | || ||| |||||| || | |||| ||| | | || ||||| | ||||| Sbjct 247618 GTACCAACGGTACTTCAAACGGGTTGATTCCTATGATTCGTGTTTTCAATAATACTGCCC 247559 Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| | || |||||| |||||| ||| | || || | | | || || | Sbjct 247558 GTTATGTGGACCAGGGTGGTAACAAGAGACCTGGTGCTTTCGCCCTTTTCTTGGAGCCAT 247499 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||| ||||||| || || || | || | | |||| || || |||||| Sbjct 247498 GGCATGCAGATATCTTCGACTTTGTCGATATCAGAAAAACACATGGTAAGGAAGAAATTC 247439 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | ||| | ||||| || ||| | ||||| | ||| | ||||||||||||||||||| Sbjct 247438 GTGCAAGAGATTTGTTCCCTGCTCTATGGATCCCTGATCTTTTCATGAAACGTGTTCAAG 247379 Query 110899 AAAATGG 110905 | |||| Sbjct 247378 AGGATGG 247372 >seq5 Length=567085 Score = 113 bits (124), Expect = 1e-19 Identities = 393/609 (65%), Gaps = 11/609 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| |||||| | |||||| |||||||||| | |||| || | | Sbjct 299927 TATTTTGGTTTTAAAACTTTGGAACGTTCTTATTTACTAAGAATCAACGGTCAAGTGGCC 299986 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| | || | | || || | || || || || ||||| | Sbjct 299987 GAACGTCCACAACATTTAATTATGAGAGTCGCACTAGGCATCCACGGTAGAGATATCGAG 300046 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| | | ||| ||| | | | | ||| | || ||| || |||| || Sbjct 300047 GCTGCTTTAGAAACGTATAACTTGATGTCTCTAAAATATTTTACTCACGCCTCTCCAACG 300106 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 | || || || || ||| | ||| || | ||||| |||||| | | || || Sbjct 300107 TTGTTCAATGCCGGTACTCCAAAACCTCAAATGTCCTCTTG-TTTCTTGGTTGCCATGAA 300165 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || ||||| || || ||||| || | | || ||| |||| | ||||| |||| Sbjct 300166 GGAGGACTCTATCGAGGGGATTTACGACACCTTGAAGGAATGTGCTTTGATTTCCAAAAC 300225 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | || | ||| | ||||| |||| || | | || || Sbjct 300226 TGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTCAACTGGTTCTTACATTGCTGG 300285 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | || | |||| ||| | | || ||||| |||| || Sbjct 300286 TACAAACGGTACTTCTAACGGTTTAATTCCTATGATTCGTGTTTTCAATAACACCGCCCG 300345 Query 110723 ATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | || |||||||| | || ||| | ||||| | || || ||||| || Sbjct 300346 TTATGTTGACCAGGGTGGTAATAAAAGACCTGGTGCGTTTGCCCTTTACCTGGAACCATG 300405 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| | ||||||||||| || | || || | || || || || | |||| ||| Sbjct 300406 GCATGCTGATATATTTGATTTTATTGATATTAGGAAGAACCACGG---TAAAGAGGAAAT 300462 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| || ||| | |||||| | ||| | |||||||| ||||| | Sbjct 300463 TCGTGCAAGAGATTTGTTCCCTGCTCTATGGATTCCTGATCTTTTCATGAAGCGTGTCGA 300522 Query 110897 AGAAAATGG 110905 ||||||||| Sbjct 300523 AGAAAATGG 300531 >seq4 Length=1488616 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 || |||| |||| |||| || | ||||||||||| |||||||| || | || || Sbjct 212300 TTGCAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGTCAACCA--CAAGCTC 212243 Query 304944 CTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTC 305003 ||||| || ||| | || | || |||| | || | || ||||||||||||| Sbjct 212242 TTCAAAAGTCCGGCCGTCCCGTTAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGTC 212183 Query 305004 GTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAAT 305058 |||| |||||||| ||||||| || ||||| |||||| ||||||| ||| || Sbjct 212182 GTATCAGAGGTAATTTAATGGGTAAGCGTGTGGATTTTTCGGCAAGAACTGTTAT 212128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805242598617