Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740425.1_202016-09- 21] 489 sequences; 12,256,569 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10 230 3e-55 seq9 219 5e-52 seq5 168 8e-37 >seq10 Length=753665 Score = 230 bits (254), Expect = 3e-55 Identities = 608/916 (66%), Gaps = 17/916 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| ||||| || || | || || || | Sbjct 400889 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 400830 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| || || |||| || || || ||| ||| || || | | | Sbjct 400829 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAAGCAACCAAC 400770 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 400769 AGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAA 400710 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| |||| || || ||||| | |||| |||| || | || ||||| | | || Sbjct 400709 GCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 400652 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 400651 TTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 400592 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||||| |||||||| || ||||| |||||||| |||| Sbjct 400591 AGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCA 400532 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| ||||| |||||||| || || ||||| || || || || || | ||||| Sbjct 400531 TCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTT 400472 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| |||||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 400471 CAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 400413 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| || ||||||| | ||| || || | || | ||| || | | Sbjct 400412 CTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACA-A 400354 Query 19207 TACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | || | || ||| || || || | || | ||| ||||| || ||| |||| Sbjct 400353 GA-ATTCACT-TTCTTTAGGGTCCTTGATGTAGGTATCGATCAACAAGGAGTAAGTTTCA 400296 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||||||||| || || || || ||||| |||| |||| |||| || || Sbjct 400295 GAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGG 400236 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | | || |||| ||||| ||||||||||| || || ||| ||| || ||| Sbjct 400235 ACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAA 400176 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATC 19439 || || | || ||| ||| | | || | | ||| || | ||||| || Sbjct 400175 AAGGCAAGAACTCTGGAAATGAAAAATCTCTCGT-TCTCGTTCATTCTGTTGTTCCAGTC 400117 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 || ||||| ||||| ||||| | ||||||| | ||||| |||||||| || || || Sbjct 400116 ATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCACGCTT 400057 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 || | ||| || ||| | || | ||||| || | |||| ||| | || | ||| Sbjct 400056 GTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTCTCCTTGTCTTC 399997 Query 19560 TTTAAGAATAGGTTCC 19575 || | | ||||||| Sbjct 399996 ATTCAACAAAGGTTCC 399981 >seq9 Length=444539 Score = 219 bits (242), Expect = 5e-52 Identities = 565/860 (66%), Gaps = 3/860 (0%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||| |||| |||||| || || |||| || | ||||| | ||| Sbjct 244241 AGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACGATT 244300 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||||| |||| ||||||||||||| || || || || || | ||||| Sbjct 244301 TCACAACATAAATTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTGTTA 244360 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 ||||||||||| |||| ||| |||||||| || |||||| |||| | || | || | Sbjct 244361 CATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATGGCA 244420 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | | | | ||||| | | | || | | || |||||| |||| Sbjct 244421 TACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGAGTA 244477 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| | ||||||||||| || |||||| |||||| || || || | || | Sbjct 244478 TATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGCGAA 244537 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | || | |||| | |||| | || || | |||| || | ||| || ||||| ||| Sbjct 244538 AATAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCATAGA 244597 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || || ||||| || | | | |||||| || ||| | || | | || | | Sbjct 244598 GCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCGACA 244657 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||||| | ||||| ||||||||||| || || | | || | |||| |||| || Sbjct 244658 AAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTG 244717 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||| || || || | ||| | ||||||||| || |||| | | ||| || | | Sbjct 244718 TTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATCAAC 244777 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 || ||||| |||| ||||| || | |||||| || | | | || || | || Sbjct 244778 CCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTGATA 244837 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| | ||||||||| |||| || || | |||||| ||| | ||||||||| Sbjct 244838 TGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 244897 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| ||| ||||| |||| | || ||||| ||||||||| ||||| Sbjct 244898 ATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGATGT 244957 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || | || ||||| ||||| || || ||| | || || | || | ||| Sbjct 244958 GGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCAAA 245017 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||| || | | ||||| || ||||| | ||| ||||||| | ||||||||| Sbjct 245018 TTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGCATT 245077 Query 48717 AACATATATTGAGGTCTTTC 48736 | || || ||||| | ||| Sbjct 245078 ACCAAATGCTGAGGACGTTC 245097 >seq5 Length=571735 Score = 168 bits (186), Expect = 8e-37 Identities = 808/1270 (64%), Gaps = 43/1270 (3%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||| || |||| |||||| ||||||| || |||||||||| | Sbjct 301754 TTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACG 301695 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | |||| ||| | || || | ||| | | | | | |||| Sbjct 301694 AAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGCTTT 301636 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | || || | | || | ||||| ||||||| |||||| || || Sbjct 301635 G--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCA 301578 Query 48138 CCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || || ||| | || || |||||| | | ||| | | |||| ||| | ||| Sbjct 301577 CCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATT 301519 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | || || | |||| || | ||| || ||||| ||||| || ||||| || | Sbjct 301518 TTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGC 301459 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 | | ||| || || || ||| | ||| |||| ||| || | |||||||||||| Sbjct 301458 ACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATG 301399 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | || | || | |||| |||| ||||||||| || || || | ||| Sbjct 301398 CCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATA 301339 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | |||||| || || |||| | | ||| || | | ||| || || |||| || || Sbjct 301338 ACGGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGT 301279 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || | ||| ||| ||| | | | || ||| || | ||| |||||||| || Sbjct 301278 ACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGC 301219 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || | |||||| || | ||| || ||||| || || ||| || || Sbjct 301218 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 301159 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 |||| | | |||||| |||||||| || | ||| || | ||| || || Sbjct 301158 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAA 301099 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | ||| Sbjct 301098 CGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGC 301039 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| | || || |||| | || | ||| | | || ||| || | ||| Sbjct 301038 CTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTC 300979 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || || ||| | | | ||| || |||||| ||||||||||||||||| Sbjct 300978 GGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 300919 Query 48797 GTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TA 48854 |||| |||||| || | |||| | ||||| || || | | | ||||| | || | Sbjct 300918 ACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCA 300860 Query 48855 T----ATACT----ACATCCATTACATTTTTTGATA-------TA-----------ATTG 48888 | ||| | |||| ||| | | | || | || |||| Sbjct 300859 TGACAATATTGTAGACAT-CATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTG 300801 Query 48889 A-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947 | | | ||||||||||| ||||| | | |||| |||| | |||| |||||| | | Sbjct 300800 ACGTATCTATAAAGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAA 300741 Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007 ||||| || | ||||| || |||| | || ||||||||||||| || || ||| || Sbjct 300740 TTAGAAATGGCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATGAACAGTAGT-CATATA 300682 Query 49008 CTAG-ATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCC 49066 | || |||| || ||||| | |||| ||| | || || |||||| ||| | || Sbjct 300681 AGCGCATGTTTCAGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCTTCATAGACACC 300622 Query 49067 TTGAATAACTTTCATT--GCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAA 49124 ||| | | | || | | || || | || ||||| | ||| | ||||| Sbjct 300621 AGAAATGA--TACGTTGGGTGACCTTAACGGCGTCGATATGTTTTGGATCTAAACCATAG 300564 Query 49125 CATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCA 49184 ||||| | ||| | || ||||| ||||| || | | |||||||||||||| Sbjct 300563 CATAAGCGTGATATACGAGCGGTAATCTTATCGAATTGGACAGGTTCTTTACGACCGTCT 300504 Query 49185 CGTTTTATAA 49194 | |||||||| Sbjct 300503 C-TTTTATAA 300495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105364109960