Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740445.1_202016-09- 21] 517 sequences; 12,286,898 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 143 6e-29 seq9 111 4e-19 >seq12 Length=1059096 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| ||||| || || || ||||| ||||| ||| || ||| Sbjct 65627 CAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCGAC 65568 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 65567 ACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAA 65508 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || |||||||| || || || | || || || | Sbjct 65507 AGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATT 65448 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||| || || || || || ||||| ||||| Sbjct 65447 CAAAAGGAGTCCACTCTTCACCTTGTCTTGAG 65416 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 495117 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGAC 495176 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| || || || ||||| ||| Sbjct 495177 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAACAA 495236 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| || ||| | |||| || ||| || Sbjct 495237 AGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAACATC 495296 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || |||||| | ||| Sbjct 495297 CAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGA 495335 >seq9 Length=441105 Score = 111 bits (122), Expect = 4e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||| || || ||| | || || || || ||||| | || || ||| || ||||| || Sbjct 73068 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 73127 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||| || | Sbjct 73128 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 73187 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCAAA 178107 ||||| || || || || | ||||| || || || |||| | || || ||| | |||| Sbjct 73188 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTACAACATTCAAA 73246 Query 178108 AAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || |||| | || |||||| | ||| Sbjct 73247 AAGAATCCACTTTGCACTTAGTCTTGAGATTGAGA 73281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723226409298