Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740545.1_202016-09- 21] 192 sequences; 12,008,617 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq12 105 5e-18 seq9 84.2 2e-11 >seq12 Length=1050418 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| ||||| || || ||||| || || || ||| Sbjct 495045 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 494986 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 494985 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 494926 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| || || ||||| | ||| ||| || | | || || Sbjct 494925 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 494866 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||||||||||||||| || || |||||||| Sbjct 494865 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 494818 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| ||||||||||| | ||| |||||| ||||| |||||||| Sbjct 64266 ACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGA 64325 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| ||| || || ||||| ||||| | ||| || || |||| Sbjct 64326 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 64385 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| |||||| || || | ||| ||| || | | || || Sbjct 64386 AATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAAC 64445 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| || | ||||| ||||| |||||||| Sbjct 64446 CTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 64493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| ||||||| || || || || ||||| || || || || Sbjct 64038 ACCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 64097 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| || | ||| || || ||||| ||||| | || || ||| |||| Sbjct 64098 CAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGG 64157 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| |||||| |||||| | ||| ||| || | | || || Sbjct 64158 GATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 64217 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| ||| || || || |||||||| Sbjct 64218 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64265 >seq9 Length=430461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || || | ||| ||||||||||| || || || Sbjct 68430 ACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 68371 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 68370 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 68311 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| ||| ||||| | ||| ||| || | | || || Sbjct 68310 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 68251 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAA 44112 || | || || || ||||| || |||||||| ||||| Sbjct 68250 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 68212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776769820416