Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740665.1_202016-09-
21] 380 sequences; 12,293,473 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq98 116 6e-21
seq12 113 7e-20
seq11 107 3e-18
seq9 89.7 8e-13
>seq98
Length=763
Score = 116 bits (128), Expect = 6e-21
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||| || | ||||||||| || || || || || ||
Sbjct 289 CCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 348
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| |||| ||| || ||||||||||||||||| || |||||||||||
Sbjct 349 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 408
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||||||||| ||| || ||| ||| ||
Sbjct 409 ATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 468
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || || || ||||||| ||||| | ||| ||||||||
Sbjct 469 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 515
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||||||| || ||||| ||||| || |||||||| ||
Sbjct 517 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 576
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || || | ||| || || ||||| ||||||||||| ||||| |||||
Sbjct 577 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 636
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 637 ATACCTTCCTTGTCTTG 653
Score = 96.9 bits (106), Expect = 5e-15
Identities = 155/228 (68%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| || | || || || | || | ||| || || ||| || ||||| || || ||
Sbjct 61 CCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCCGA 119
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| ||||| | ||| |||| |||||| || ||||| |||||||||||||| || |||||
Sbjct 120 CAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAGATCAATCTTTGCTGGTCTGGAGG 179
Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229
||| ||||| || ||||| ||| || ||| ||| ||
Sbjct 180 AATACCTTCCTTGTCTTGAATTTTTGACTTAACGTTGTCAATAGTGTCAGAAGATTCAAC 239
Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || || |||||||| | ||| || | ||| ||||||||
Sbjct 240 CTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 287
>seq12
Length=1067197
Score = 113 bits (124), Expect = 7e-20
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || ||||| |||| ||||||||| || || || || || ||
Sbjct 501095 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 501036
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||| | ||| || ||||| || |||||||| ||||||||||| || || || |||
Sbjct 501035 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 500976
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| ||| || ||| ||| |||
Sbjct 500975 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 500916
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280
|| || || || || ||||| ||||| || || | ||| |||||||| ||
Sbjct 500915 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 500866
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| || | || || || | || | ||| || || ||| || ||||| || || ||
Sbjct 65260 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCCGA 65318
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| ||||| | ||| |||| ||| || || |||||||||||||||||||| || |||||
Sbjct 65319 CAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGG 65378
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 65379 AATACCTTCCTTGTCTTG 65396
Score = 91.5 bits (100), Expect = 2e-13
Identities = 158/237 (67%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| || |||| || | |||||| || || || || || || ||||| ||
Sbjct 65716 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 65775
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || |||| || || || ||||| ||||||||||| ||||| |||||
Sbjct 65776 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 65835
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| ||||| ||| ||| |||
Sbjct 65836 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 65895
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT--TTTATTAG 146285
|| | ||| || |||||||| || || || || | ||| || ||||| | ||||||
Sbjct 65896 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 65952
>seq11
Length=647917
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||||||||||||| ||||| || || || || || ||
Sbjct 620516 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 620575
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | || || ||||| || |||||||| ||||||||||| || || || ||
Sbjct 620576 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 620635
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 620636 ATACCTTCCTTGTCTTG 620652
>seq9
Length=435738
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || || || || ||||| |||||||| || || || || ||
Sbjct 70802 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 70743
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | || || ||||| || |||||||| ||||||||||| || || || ||
Sbjct 70742 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 70683
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 70682 ATACCTTCCTTGTCTTG 70666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743522868249600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |