Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740665.1_202016-09- 21] 380 sequences; 12,293,473 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq98 123 2e-23 seq12 100 2e-16 >seq98 Length=763 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| ||||||| || | ||| |||||||| | ||||| || ||| Sbjct 289 CCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 348 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || || | ||| || || ||||||||||||| ||||||||| | || Sbjct 349 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 408 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||||||| || ||| | ||| |||||| || ||| |||||| || || | Sbjct 409 ATACCTTCTTTATC-TTGAATTTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAA 466 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 467 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| ||||||||||| | || ||| || || | || ||||| ||| Sbjct 517 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 576 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || |||||||| ||||||| |||||||| | || Sbjct 577 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 636 Query 43003 ACACCTTCTTTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 | |||||| || || ||| || || || || || | | || ||| || || Sbjct 637 ATACCTTCCTTGTC-TTGAATTTTCGAC---TTAACGTTGTCGATGGTATCGGAAGATTC 692 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||||| || || || || || || |||||||||||||| Sbjct 693 AACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 743 >seq12 Length=1067197 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 501095 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 501036 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 501035 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 500976 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 500975 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 500916 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 500915 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 500866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | ||| || || Sbjct 65289 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACC 65348 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA----TCAACT 43027 |||||||||||||| || || || | || | |||||| || || ||| || || Sbjct 65349 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGAC- 65406 Query 43028 CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTA 43087 || || || ||| ||||| || || || |||| |||||||| || || || | Sbjct 65407 --TTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCA 65464 Query 43088 GAGTTTTCACAAAAATTTGCAT 43109 | || || |||||||||||||| Sbjct 65465 GTGTCTTGACAAAAATTTGCAT 65486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367833782040