Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740895.1_202016-09- 21] 212 sequences; 11,991,999 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10 230 3e-55 seq9 223 4e-53 seq5 159 4e-34 >seq10 Length=743221 Score = 230 bits (254), Expect = 3e-55 Identities = 608/916 (66%), Gaps = 17/916 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| ||||| || || | || || || | Sbjct 391797 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 391738 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| || || |||| || || || ||| ||| || || | | | Sbjct 391737 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAAGCAACCAAC 391678 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 391677 AGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAA 391618 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| |||| || || ||||| | |||| |||| || | || ||||| | | || Sbjct 391617 GCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 391560 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 391559 TTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 391500 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||||| |||||||| || ||||| |||||||| |||| Sbjct 391499 AGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCA 391440 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| ||||| |||||||| || || ||||| || || || || || | ||||| Sbjct 391439 TCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTT 391380 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| |||||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 391379 CAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 391321 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| || ||||||| | ||| || || | || | ||| || | | Sbjct 391320 CTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACA-A 391262 Query 19207 TACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | || | || ||| || || || | || | ||| ||||| || ||| |||| Sbjct 391261 GA-ATTCACT-TTCTTTAGGGTCCTTGATGTAGGTATCGATCAACAAGGAGTAAGTTTCA 391204 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||||||||| || || || || ||||| |||| |||| |||| || || Sbjct 391203 GAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGG 391144 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | | || |||| ||||| ||||||||||| || || ||| ||| || ||| Sbjct 391143 ACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAA 391084 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATC 19439 || || | || ||| ||| | | || | | ||| || | ||||| || Sbjct 391083 AAGGCAAGAACTCTGGAAATGAAAAATCTCTCGT-TCTCGTTCATTCTGTTGTTCCAGTC 391025 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 || ||||| ||||| ||||| | ||||||| | ||||| |||||||| || || || Sbjct 391024 ATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCACGCTT 390965 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 || | ||| || ||| | || | ||||| || | |||| ||| | || | ||| Sbjct 390964 GTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTCTCCTTGTCTTC 390905 Query 19560 TTTAAGAATAGGTTCC 19575 || | | ||||||| Sbjct 390904 ATTCAACAAAGGTTCC 390889 >seq9 Length=430872 Score = 223 bits (246), Expect = 4e-53 Identities = 566/860 (66%), Gaps = 3/860 (0%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||| |||| |||||| || || |||| || | ||||| | ||| Sbjct 235826 AGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACGATT 235885 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||||| |||| ||||||||||||| || || || || || | ||||| Sbjct 235886 TCACAACATAAATTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTGTTA 235945 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 ||||||||||| |||| ||| |||||||| || |||||| |||| | || | || | Sbjct 235946 CATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATGGCA 236005 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | | | | ||||| | | | || | | || |||||| |||| Sbjct 236006 TACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGAGTA 236062 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| | ||||||||||| || |||||| |||||| || || || | || | Sbjct 236063 TATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGCGAA 236122 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | ||| | |||| | |||| | || || | |||| || | ||| || ||||| ||| Sbjct 236123 AACAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCATAGA 236182 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || || ||||| || | | | |||||| || ||| | || | | || | | Sbjct 236183 GCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCGACA 236242 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||||| | ||||| ||||||||||| || || | | || | |||| |||| || Sbjct 236243 AAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTG 236302 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||| || || || | ||| | ||||||||| || |||| | | ||| || | | Sbjct 236303 TTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATCAAC 236362 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 || ||||| |||| ||||| || | |||||| || | | | || || | || Sbjct 236363 CCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTGATA 236422 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| | ||||||||| |||| || || | |||||| ||| | ||||||||| Sbjct 236423 TGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 236482 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| ||| ||||| |||| | || ||||| ||||||||| ||||| Sbjct 236483 ATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGATGT 236542 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || | || ||||| ||||| || || ||| | || || | || | ||| Sbjct 236543 GGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCAAA 236602 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||| || | | ||||| || ||||| | ||| ||||||| | ||||||||| Sbjct 236603 TTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGCATT 236662 Query 48717 AACATATATTGAGGTCTTTC 48736 | || || ||||| | ||| Sbjct 236663 ACCAAATGCTGAGGACGTTC 236682 >seq5 Length=560716 Score = 159 bits (176), Expect = 4e-34 Identities = 806/1270 (63%), Gaps = 43/1270 (3%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||| || |||| |||||| ||||||| || |||||||||| | Sbjct 297193 TTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACG 297134 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | |||| ||| | || || | ||| | | | | | |||| Sbjct 297133 AAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGCTTT 297075 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | || || | | || | ||||| ||||||| |||||| || || Sbjct 297074 G--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCA 297017 Query 48138 CCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || || ||| | || || |||||| | | ||| | | |||| ||| | ||| Sbjct 297016 CCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATT 296958 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | || || | |||| || | ||| || ||||| ||||| || ||||| || | Sbjct 296957 TTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGC 296898 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 | | ||| || || || ||| | ||| |||| ||| || | ||||||||||| Sbjct 296897 ACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAAGATATCAGCATG 296838 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | || | || | |||| |||| ||||||||| || || || | ||| Sbjct 296837 CCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATA 296778 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | ||| || || || |||| | | ||| || | | ||| || || |||| || || Sbjct 296777 ACGGGCGGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGT 296718 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || | ||| ||| ||| | | | || ||| || | ||| |||||||| || Sbjct 296717 ACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGC 296658 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || | |||||| || | ||| || ||||| || || ||| || || Sbjct 296657 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 296598 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 |||| | | |||||| |||||||| || | ||| || | ||| || || Sbjct 296597 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAA 296538 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | ||| Sbjct 296537 CGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGC 296478 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| | || || |||| | || | ||| | | || ||| || | ||| Sbjct 296477 CTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTC 296418 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || || ||| | | | ||| || |||||| ||||||||||||||||| Sbjct 296417 GGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 296358 Query 48797 GTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TA 48854 |||| |||||| || | |||| | ||||| || || | | | ||||| | || | Sbjct 296357 ACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCA 296299 Query 48855 T----ATACT----ACATCCATTACATTTTTTGATA-------TA-----------ATTG 48888 | ||| | |||| ||| | | | || | || |||| Sbjct 296298 TGACAATATTGTAGACAT-CATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTG 296240 Query 48889 A-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947 | | | ||||||||||| ||||| | | |||| |||| | |||| |||||| | | Sbjct 296239 ACGTATCTATAAAGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAA 296180 Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007 ||||| || | ||||| || |||| | || ||||||||||||| || || ||| || Sbjct 296179 TTAGAAATGGCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATGAACAGTAGT-CATATA 296121 Query 49008 CTAG-ATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCC 49066 | || |||| || ||||| | |||| ||| | || || |||||| ||| | || Sbjct 296120 AGCGCATGTTTCAGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCTTCATAGACACC 296061 Query 49067 TTGAATAACTTTCATT--GCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAA 49124 ||| | | | || | | || || | || ||||| | ||| | ||||| Sbjct 296060 AGAAATGA--TACGTTGGGTGACCTTAACGGCGTCGATATGTTTTGGATCTAAACCATAG 296003 Query 49125 CATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCA 49184 ||||| | ||| | || ||||| ||||| || | | |||||||||||||| Sbjct 296002 CATAAGCGTGATATACGAGCGGTAATCTTATCGAATTGGACAGGTTCTTTACGACCGTCT 295943 Query 49185 CGTTTTATAA 49194 | |||||||| Sbjct 295942 C-TTTTATAA 295934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107310411680