Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740905.1_202016-09- 21] 219 sequences; 12,004,411 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq12 140 3e-28 seq101 105 5e-18 seq9 93.3 3e-14 >seq12 Length=1041761 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||||||| ||||||| || || || ||| | || || || | Sbjct 59412 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 59353 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || ||| |||||| ||||||||||| | || |||||| Sbjct 59352 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 59293 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| ||| ||||| || || || || | | ||| || | ||||||||| Sbjct 59292 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 59233 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| ||||| | ||| |||||||||||||| |||| || Sbjct 59232 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 59186 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || | ||||| || || || ||| | || || || Sbjct 59640 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 59581 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || || ||| || || ||||| | || ||||| Sbjct 59580 GACACTATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 59521 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| ||||| || ||||| |||| | ||| || | || || ||| Sbjct 59520 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 59461 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||||||||| |||||||||||||| |||| || Sbjct 59460 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 59414 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699 |||||| ||||||||||| | || |||||| |||||| | |||| ||| ||||| Sbjct 59079 AAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAG 59020 Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 || || || || | | ||| || | ||||||||||| |||||||| ||||| | ||| Sbjct 59019 CAACTAGAAGATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCAC 58960 Query 107760 ATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| |||| || Sbjct 58959 TTGGTGTTGAGATTGAGAGGTGG 58937 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| ||||| |||||||| || || || |||||| | ||| || || Sbjct 489249 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 489308 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||| | | | | || || ||||| || || ||||| | || || Sbjct 489309 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 489368 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || ||| | || | ||| ||||| || |||| || | | ||| || | |||||| Sbjct 489369 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 489428 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| ||||| | ||| |||| ||||||||| |||| || Sbjct 489429 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 489478 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| ||||| || || |||||||| || | ||| || || | Sbjct 60026 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 59967 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || || ||| || || ||||| | || ||||| Sbjct 59966 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 59907 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| ||||| ||||| || |||| | ||| || | || |||||| Sbjct 59906 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 59847 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| |||||||| || || || Sbjct 59846 ATTCAGAAGGAGTCCACCTTACA 59824 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || | ||||| || || || ||| | || || || Sbjct 58935 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 58876 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || || ||| || || ||||| | || || ||| Sbjct 58875 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 58816 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| ||||| || || || || | | ||| || |||||||||| Sbjct 58815 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 58756 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 |||||||||||||| || | ||| | || ||||| ||| | || || || Sbjct 58755 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGTAA 58706 >seq101 Length=338 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699 |||||| ||||||||||| | || |||||| |||||| | |||| ||| ||||| Sbjct 28 AAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAG 87 Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 || || || || | | ||| || | ||||||||||| |||||||| ||||| | ||| Sbjct 88 CAACTAGAAGATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCAC 147 Query 107760 ATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| |||| || Sbjct 148 TTGGTGTTGAGATTGAGAGGTGG 170 >seq9 Length=426584 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 107564 TTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGT 107623 ||||||||| ||||| || || || ||||| || | ||| || || || ||| | Sbjct 61777 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 61836 Query 107624 CGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACT 107683 | | | || || ||||||| || || ||||| | || || || || ||| | Sbjct 61837 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 61896 Query 107684 TATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAA 107743 || | ||| ||||| || |||| |||| | ||| || | ||||||||||||||||| Sbjct 61897 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAA 61956 Query 107744 GGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || |||||| | || ||||||||| |||| || Sbjct 61957 AGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 61995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875735372891