Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001740905.1_202016-09- 21] 219 sequences; 12,004,411 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq12 105 6e-18 seq101 95.1 1e-14 seq9 89.7 5e-13 >seq12 Length=1041761 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||| || || | || || | || || ||| | | Sbjct 59412 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 59353 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| || ||| |||||||| ||||| || || ||||| Sbjct 59352 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 59293 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | |||| | || || ||||| ||||||| ||||| |||| | | |||| Sbjct 59292 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTG--ACTACA 59235 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||| ||||| || |||| || ||||| ||||||||||| || Sbjct 59234 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 59186 Score = 102 bits (112), Expect = 7e-17 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | || || || | || || | || || ||| | Sbjct 58935 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 58876 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || |||||| || || || ||||| || || || ||| Sbjct 58875 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 58816 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||| | |||| | ||| || ||||| ||||||| ||||| |||| | | |||| Sbjct 58815 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGG--ACTACA 58758 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCAT 25412 |||||||||| || ||||| |||| | || || || ||||| || || || |||||| Sbjct 58757 ATATTCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGTAACTGATCAG 58698 Query 25413 TC 25414 || Sbjct 58697 TC 58696 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | || || || | || || | || || ||| | Sbjct 59640 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 59581 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || |||||| || || || ||||| || || ||||| Sbjct 59580 GACACTATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 59521 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||| | |||| | ||| || ||||| ||||| | ||||| |||| | |||| | Sbjct 59520 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTG--ATTATA 59463 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||| ||||| || || | ||||| ||||| ||||||||||| || Sbjct 59462 ACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 59414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| ||||| || | || ||| || ||| |||||||| ||||| || || ||||| Sbjct 59104 CGACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCA 59045 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||| | |||| | || || ||||| ||||||| ||||| |||| | | ||| Sbjct 59044 ACAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTG--ACTAC 58987 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||| ||||| || |||| || ||||| ||||||||||| || Sbjct 58986 AACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 58937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || || || || |||||||| || | || || | ||||| ||| | Sbjct 489248 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATC 489307 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||||| || | || || || || || || || ||||| || || || Sbjct 489308 TTCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGA 489367 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||| | || | | || || ||| | ||||||| ||||| | | ||| || Sbjct 489368 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTA 489427 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| ||||| || | || || || || ||||||||||| || Sbjct 489428 CAACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 489478 >seq101 Length=338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| ||||| || | || ||| || ||| |||||||| ||||| || || ||||| Sbjct 3 CGACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCA 62 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||| | |||| | || || ||||| ||||||| ||||| |||| | | ||| Sbjct 63 ACAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTG--ACTAC 120 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||| ||||| || |||| || ||||| ||||||||||| || Sbjct 121 AACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 170 >seq9 Length=426584 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || || || || || | ||||| | ||||| ||| | || ||||| Sbjct 61778 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 61837 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || ||| ||| || || || ||||| || || || || |||||| | Sbjct 61838 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 61897 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || ||| | ||||| | ||||| |||| | | ||||| ||||||| Sbjct 61898 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTG--ACTACAACATTCAAA 61955 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| | || ||||| || ||||||||||| || Sbjct 61956 AAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 61995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093181554080