Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001741135.1_202016-09- 21] 378 sequences; 12,395,708 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 123 1e-23 seq9 93.3 2e-14 >seq5 Length=564765 Score = 123 bits (136), Expect = 1e-23 Identities = 311/473 (66%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| ||||||| ||| |||||| || || || ||| || | ||| |||| Sbjct 300007 TTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCAGGAA 299948 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||| || |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 299947 TCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAA 299888 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| | |||||||| ||||| | ||||||||||| | || | ||||| ||| Sbjct 299887 TATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAG 299828 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 |||||| ||||| || || || || | ||||| | ||||||||| | ||| | Sbjct 299827 GTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAACACGAATCATAG 299768 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| ||| || | ||| |||||||| | | ||| | || || || || | ||| | Sbjct 299767 GAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGT 299708 Query 26190 CGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTG 26249 || ||| | ||| || |||||||| ||| ||||| ||||| || | | Sbjct 299707 TATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGG 299648 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| |||| || | || || | ||||| | | || |||||||| || | || Sbjct 299647 TGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTT 299588 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | || || | ||| || || || || | || |||||| ||||| Sbjct 299587 GAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATAT 299535 Score = 89.7 bits (98), Expect = 3e-13 Identities = 317/492 (64%), Gaps = 14/492 (3%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 ||||| | ||| ||||| || || |||||| ||||||||| |||||||||||||| | Sbjct 301181 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 301122 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGG-CAA-- 24811 |||||||| | || ||| | ||| ||||| |||| || |||| ||| ||| Sbjct 301121 GTTAGTTTACCCATAGTTGGGGCACGTAAGAACAAATTCAAAGAATGAGATTGATCAATA 301062 Query 24812 ---ACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAA 24868 ||| |||| ||| || || | || |||||| || || || || || || Sbjct 301061 TAGACAGAACG------ATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAA 301008 Query 24869 GCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCA 24928 | || |||||| || || | || ||||| | ||| | ||||| || ||| Sbjct 301007 ACAGTCTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAGCCTTGAATGGAGCCA 300948 Query 24929 TTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTTTCAAGATC 24987 |||| | | | |||| | | ||||| | ||||| | ||| | |||| || Sbjct 300947 TTTTGTGTAATCAGATACTGTTTCATACCCTCATCCCAAATACCTAAATCAACCAAG-TC 300889 Query 24988 TCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA 25047 | | |||| || | | ||||| || || || || | | | | Sbjct 300888 ACGCAGTAAGTAAGGGTTCACAACCTGGAATTCACCGGATAAGACACGACGGGAGTACAT 300829 Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 || ||||||| |||||| ||||||||||||| || || ||||| || || ||||| || Sbjct 300828 ATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGTGGATGCAGT 300769 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 |||||| ||| || | |||||||| | ||||| || | || |||| | |||| Sbjct 300768 AGGCATTGGTGCCATGGTCAAGGAATTTCTAATACCATGCTTCATGATATCTTTTCTTAA 300709 Query 25168 TTTATCCCAATC 25179 | |||||||| Sbjct 300708 GGTGTCCCAATC 300697 >seq9 Length=445890 Score = 93.3 bits (102), Expect = 2e-14 Identities = 162/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 |||||| || | |||||| ||||||||||||| || | ||||| ||||| || || || Sbjct 238962 GTTTGAGGTCACTGGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGT 239021 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| ||| || | || ||||| || |||| ||||||||| || | | |||| Sbjct 239022 TGGCATTGGTGCCATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAA 239081 Query 25168 TTTATCCCAATCTAAATTATTATCTAACTCG-ATATCGTTATCATATAAATCAAATTGTA 25226 | |||||||| | | | || | | || |||| || || ||| ||||||| Sbjct 239082 GGTTTCCCAATCCCACAT----GCCAAATGGTTTAGCGTT-CCACAT--ATCGAATTGTA 239134 Query 25227 ACAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTT 25274 | ||| | ||| | || || || |||||||| ||||||||||||| Sbjct 239135 A-AATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTT 239182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038834276350