Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001741375.1_202016-09- 21] 181 sequences; 12,000,634 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq12 152 5e-32 seq79 143 2e-29 seq9 118 1e-21 >seq12 Length=1057064 Score = 152 bits (168), Expect = 5e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| |||||||||||| | ||||||||||||||| | | Sbjct 60944 AAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATG 61003 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | || || ||||| || ||| ||||||| || || || Sbjct 61004 TTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGT 61063 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||||||||| |||||||| ||||| | ||||| | ||| ||| ||| ||||| Sbjct 61064 TGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCG 61123 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| || || | ||| || |||||||||||||| Sbjct 61124 GAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 61182 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||| ||||| ||||| || || || | | Sbjct 60716 AAAATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATG 60775 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || || | || ||||| || || ||| |||| || |||||||| Sbjct 60776 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGT 60835 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||||||||| ||||| | |||||| |||||| | | | |||||| Sbjct 60836 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCG 60895 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 60896 GAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 60954 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||| ||||| ||||| || || || | | Sbjct 60467 AAAATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATG 60526 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || || | || ||||| || || ||| |||| || |||||||| Sbjct 60527 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGT 60586 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||||||||| ||||| | |||||| |||||| | | | |||||| Sbjct 60587 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCG 60646 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 | || || || | || || || || || || |||||||| || || || Sbjct 60647 GAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAAT 60699 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||||||||| |||||||||||| | ||||||||||||||| | Sbjct 60238 AAAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGAT 60297 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || || | ||| || || || || || |||| || ||||| || Sbjct 60298 GTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTG 60357 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| ||||| ||||||||||| || | ||| || |||||| | | | |||||| Sbjct 60358 TTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTC 60417 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 60418 GGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 60477 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| |||||||| | ||||||||||||||| | ||| || ||| | Sbjct 490758 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 490699 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| || || || ||||||| |||||||| || || || ||| Sbjct 490698 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 490639 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || | |||||| | | | |||||||| || || Sbjct 490638 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 490579 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || | ||| || || || || ||||| Sbjct 490578 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 490532 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| | ||| || | ||| | ||| || |||||||| | || || || | Sbjct 60023 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 60082 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || || || ||| |||| || ||||||||||| ||||||||| Sbjct 60083 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 60142 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | |||||| | ||| ||| | | | |||||||| || || Sbjct 60143 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 60202 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || || || || ||||| || ||||| Sbjct 60203 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 60249 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || || || || ||||| || | ||| ||||| || || | || || | Sbjct 61203 CAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTA 61262 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| ||||||| |||||||| ||||||||||| |||||||| ||||| | || Sbjct 61263 GCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAA 61322 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 |||| | ||| ||| | ||| || || | || || || | || |||||||| | Sbjct 61323 TTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTAC 61382 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| || || || |||||||| Sbjct 61383 CGGTCAAAGTCTTGACGAAAATCTGCAT 61410 >seq79 Length=467 Score = 143 bits (158), Expect = 2e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||| ||||| ||||| || || || | | Sbjct 7 AAAATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATG 66 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || || | || ||||| || || ||| |||| || |||||||| Sbjct 67 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGT 126 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||||||||| ||||| | |||||| |||||| | | | |||||| Sbjct 127 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCG 186 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || |||||||| Sbjct 187 GAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 245 >seq9 Length=437573 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || ||||||||||| ||||| ||||| | ||| || || | Sbjct 73574 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 73515 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| || || || ||||||| |||||||| || || || || Sbjct 73514 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 73455 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| |||| |||||| | | | |||||||| || || Sbjct 73454 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 73395 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || | |||||||| || ||||| | ||| || ||||| Sbjct 73394 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 73357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290185741160