Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001741405.1_202016-09- 21] 126 sequences; 11,932,271 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 seq9 134 1e-26 seq11 122 8e-23 seq37 89.7 4e-13 >seq12 Length=1035024 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||||||| |||| ||| | ||||| || || || Sbjct 55221 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 55162 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | |||| ||| ||||| ||||| || || || || || Sbjct 55161 GATACCATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATCCCTCCAGATCA 55103 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| || || ||||||| | | | || || |||||||| Sbjct 55102 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAA 55043 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| ||||| | ||||||||||||||||| || Sbjct 55042 CATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 54995 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| |||||||| | || || | ||||| || || ||| Sbjct 483464 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 483523 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || ||| ||||| ||||| ||||||||||||| Sbjct 483524 GACACTATTGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACC 483581 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || || ||||| ||||||| | | ||| || ||| |||| Sbjct 483582 AACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACA 483641 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || ||||| || || | || | ||||| || Sbjct 483642 ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 483690 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||||||| ||||||| | || || || || || Sbjct 54993 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 54934 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| |||||| ||||| ||||| || || || || || Sbjct 54933 GACACGATCGA-TAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 54875 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || |||||||| || || ||||||| | | | || || || ||||| Sbjct 54874 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 54815 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || || || ||| | || | ||||| || Sbjct 54814 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 54767 Score = 118 bits (130), Expect = 9e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 53811 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 53752 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 53751 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 53693 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | ||||||||||| || ||| ||||||||| | | || || || ||||| Sbjct 53692 GCAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 53633 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || ||||| || || Sbjct 53632 TATTCAAAAGGAGTCCACTCTTCA 53609 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 54516 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 54457 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | |||| ||| ||||| ||||| ||||| || || || Sbjct 54456 GACACTATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 54398 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||||||||| || ||| | ||||| | | | || || ||||| || Sbjct 54397 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAA 54338 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| || ||| | ||||| ||| | || | ||||| || Sbjct 54337 CATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 54290 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 54765 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 54706 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | |||| ||| ||||| ||||| ||||| || || || Sbjct 54705 GACACTATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 54647 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||| | | ||||||||||| || ||| | ||||| Sbjct 54646 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGA 54611 >seq9 Length=441831 Score = 134 bits (148), Expect = 1e-26 Identities = 165/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 ||||| ||||||||||| ||||| ||||||| | ||||| || || ||||||||||| Sbjct 68780 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 68839 Query 25068 GAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || || ||| |||| | ||| ||||| ||||| || |||||||||||||| | Sbjct 68840 GA--CAATGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATCCCACCTGACCAACAAAGA 68896 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||| || || ||||| ||||| | | | || || || ||||| |||||| Sbjct 68897 TTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAA 68956 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| | || ||||| | || | ||||| || Sbjct 68957 AAAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGCGG 68997 >seq11 Length=655939 Score = 122 bits (134), Expect = 8e-23 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||||||||| ||||| ||||||| | ||||| || || |||||||| || Sbjct 620757 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 620698 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| ||||| || |||||||||||||| | Sbjct 620697 GA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGAT 620640 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || ||||| || || ||||| ||||| | | | ||| | || ||||| || |||| Sbjct 620639 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAA 620580 Query 25186 AAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| ||||||| || | || ||||||| || Sbjct 620579 AGGAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGG 620540 >seq37 Length=338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| | || || | || || || || ||| Sbjct 172 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 231 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | |||| ||| ||||| ||||| ||||| || || || Sbjct 232 GACACTATCGACAACGTTAAGTCGAAAATTCA-AGACAAGGAAGGTATTCCTCCAGATCA 290 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||| | | ||||||||||| || ||| | ||||| Sbjct 291 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGA 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327334570690