Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001741535.1_202016-09- 21] 295 sequences; 12,024,663 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 141 1e-28 seq9 114 2e-20 seq15 109 8e-19 >seq12 Length=1050694 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||||||| || |||||||| ||||| ||||| | Sbjct 58394 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 58335 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||||||||| || |||||||| || || |||||| Sbjct 58334 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 58275 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || || ||| | || || || |||| | |||||||| Sbjct 58274 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 58215 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||| || || ||||||||||| || | || |||||||||| ||| || Sbjct 58214 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 58157 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||||||| || |||||||| ||||| ||||| | Sbjct 58166 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 58107 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| || |||||||||||||||||||| || || |||||| Sbjct 58106 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 58047 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || || ||| |||| ||| || |||| || || || || Sbjct 58046 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 57987 Query 124719 ATTCAAAAAGAATCAACT 124736 || ||||| ||||| ||| Sbjct 57986 ATCCAAAAGGAATCTACT 57969 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| ||||| | || ||||| | Sbjct 58850 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 58791 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || |||||||||||| || |||||||| || || |||||| Sbjct 58790 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 58731 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || || |||| || || |||| | ||||| || Sbjct 58730 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 58671 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || || ||| | || || | || |||||||||| Sbjct 58670 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTAT 58621 >seq9 Length=439182 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| | || || || || || ||| | || ||||| | ||| || ||| Sbjct 71586 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 71645 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || |||||||| || |||||||| |||||||| |||||||| | Sbjct 71646 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 71705 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || ||||| || || ||||| || || || |||| || || || || ||||||||| Sbjct 71706 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 71765 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || || || | || |||||||||| Sbjct 71766 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 71806 >seq15 Length=1035313 Score = 109 bits (120), Expect = 8e-19 Identities = 358/556 (64%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 205318 CtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCA 205377 ||||| || |||| ||| || ||||| |||| | | | ||||| ||| || || Sbjct 456699 CTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGAGATTTGTTCTTTCAAGGCA 456758 Query 205378 TTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTT 205437 | ||| || | ||| | |||||||| || | | ||||||| || ||| ||| | Sbjct 456759 TCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCC 456818 Query 205438 AAATTAGTTAAATGT-GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGG 205496 | | | || | | |||||||| |||||| ||| ||| |||| ||||| || Sbjct 456819 ATGTC-GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAACGG 456877 Query 205497 TACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAG------------ 205544 ||| || || ||||||||| || | ||| |||| | |||| ||| Sbjct 456878 TACTCCCAACCCCATATCACAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACC 456937 Query 205545 --ATATTTATTATTAATT----------ACATGAAATTGTACAAAACAATGACAAGGTGG 205592 || || | || || |||| || ||| |||| ||| || ||||| Sbjct 456938 GGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGTGG 456997 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | | |||| || |||| ||| || |||||||| | | || || ||||| | Sbjct 456998 CAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTA 457057 Query 205653 AGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATA 205712 || || | || | ||||| |||| ||| | |||||||||| ||||| ||||| Sbjct 457058 GGGATTTGTCTTAAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATA 457117 Query 205713 ATTTGTATC-CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771 | ||| || || | ||||||||||||||||| | ||||||||| |||||||| | Sbjct 457118 GTCGTCATCGCACGTCT-TGTATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGG 457176 Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATC 205831 | || | ||| ||| |||| ||||| || || || || | || ||||| |||| Sbjct 457177 GCCCCAGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATC 457236 Query 205832 CATTTTCATCCCAAAT 205847 |||| | |||||||| Sbjct 457237 CATTACCGTCCCAAAT 457252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453214256000