Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001741725.1_202016-09- 21] 92 sequences; 12,058,477 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12 168 8e-37 seq5 129 7e-25 seq9 125 8e-24 seq11 118 1e-21 >seq12 Length=1037656 Score = 168 bits (186), Expect = 8e-37 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || |||||||| || || |||||||| || | Sbjct 63913 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCT 63854 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | |||||||| |||||||| || ||||||||||||||| Sbjct 63853 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 63794 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | |||||||| ||||||||||| || |||| | | || || | ||||| ||| Sbjct 63793 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 63734 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||| ||||||||||| || |||||| Sbjct 63733 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTTG 63701 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||||||||| || || ||||| || | Sbjct 493271 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 493330 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || || |||||||| || ||||| || ||||| Sbjct 493331 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 493390 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | || |||| | | || | | ||||| || Sbjct 493391 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 493450 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| ||||| || | |||||| Sbjct 493451 ATCCAAAAGGAATCTACTCTACACTTGGTCTTG 493483 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| || || || ||| | |||||||| || Sbjct 64369 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 64310 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | ||||| ||||||||||| || || |||||||| || Sbjct 64309 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 64250 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| |||||||| || || || | | | ||| | | ||||| || Sbjct 64249 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 64190 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||||||||| |||||||| Sbjct 64189 ATCCAAAAGGAATCTACTCTTCA 64167 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || |||||||| || || |||||||| || Sbjct 64141 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 64082 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || ||||||||| |||||||| || ||||||||||| || Sbjct 64081 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 64022 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | |||||||| ||||||||||| || || | | | || || | || ||||| Sbjct 64021 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 63962 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || || || || || | ||| | || ||| Sbjct 63961 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTG 63929 >seq5 Length=552421 Score = 129 bits (142), Expect = 7e-25 Identities = 320/476 (67%), Gaps = 21/476 (4%) Strand=Plus/Minus Query 81223 TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCG 81281 || ||| |||||||||| ||||| ||||| || || | ||||| || | ||| || Sbjct 294406 TCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCA-CG 294348 Query 81282 CGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCA 81341 ||||| | ||| ||||| | | || | ||| || | || || |||||||| Sbjct 294347 AATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCA 294288 Query 81342 TGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGGCCACCCTGGTTGACGTAAC 81397 ||| ||||| || | ||| | || || ||| | |||||||||| || |||| Sbjct 294287 TGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTT-ATTACCACCCTGGTCAACATAAC 294229 Query 81398 GGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTAC 81457 ||||||| || || ||||| | |||||| || | ||| | || |||||| |||| Sbjct 294228 GGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTAC 294169 Query 81458 CCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACC 81517 | | || || || | | || | || ||| ||||| || ||||| | | Sbjct 294168 CAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAG--C 294111 Query 81518 ACTTT--GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTT 81575 | ||| |||||| |||||| |||| ||| || ||||| |||||||| || | Sbjct 294110 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 294051 Query 81576 TTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAAC 81633 |||||| ||| ||||||||| ||||| ||||| |||| ||| |||||||||||| Sbjct 294050 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGG--TTTTGGAGTACCGGCATTGAAC 293993 Query 81634 AGTGTTGGGGTCGCGTGAATGAAATAACGGTTT---GACATCAGGTCATAGGTTTC 81686 | ||||| | |||||| | ||||| ||| ||||||| || ||| ||||| Sbjct 293992 AACGTTGGAGAGGCGTGAGTAAAATA---TTTTAGAGACATCAAGTTATACGTTTC 293940 >seq9 Length=445544 Score = 125 bits (138), Expect = 8e-24 Identities = 338/512 (66%), Gaps = 15/512 (3%) Strand=Plus/Plus Query 81232 TTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTC 81290 ||||||||| ||||||||||| || || | ||||| || | ||| || || || Sbjct 250161 TTCATGAAAAGATCAGGGATCCATAGAGCAGGGAACAAATCTCTTGCA-CGAATTTCTTC 250219 Query 81291 ATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAG 81350 | ||| || | | | |||| |||||| | ||| || |||||||||||||||| Sbjct 250220 CTTACCATGTGTTTTTCTGATATCGACAAAGTCGAAGATATCTGCATGCCATGGCTCCAA 250279 Query 81351 ATACACGGCGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 | | ||||| | || |||| || ||||||||| || ||||||||||| Sbjct 250280 GAAAAGGGCGAAAGCACCAGGTCTCTTGTTAC---CACCCTGGTCCACATAACGGGCAGT 250336 Query 81405 CGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT 81464 || || ||||| | |||||| || | || | ||| |||||| ||||| |||| Sbjct 250337 ATTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAAGTACCGTTGGTACCAGCGAT 250396 Query 81465 ACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTT-- 81522 | || || ||| || | ||| |||| |||||| | ||||||| || ||| Sbjct 250397 ATAAGAACCTGTGGAACGGATGTTGTTGATATGAAGACCAACACCACCTG--CAGTTTTG 250454 Query 81523 GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATG 81582 |||||| |||||| |||| || |||||||| || ||||| || | |||||| Sbjct 250455 GAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCGATAGAGTCATCCTTCATG 250514 Query 81583 TCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGG 81642 ||| |||||||| ||||| ||||| | | || || ||||| | |||||| Sbjct 250515 GCAATTAAGAAACATGAAGACATTTGAGGATGTGGCGTACCAGCGTTGAATAAAGTTGGG 250574 Query 81643 GTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATA 81702 | |||||| |||| || | ||||||| | ||| || | | || | ||| Sbjct 250575 GAAGCGTGAGTGAAGTATCTTAACGACATCAAATTATAAGTCTTCAGCACAGATTCGATA 250634 Query 81703 TCGTCACCGTGAATACCGATAGCTACACGCAT 81734 ||| ||| || ||||| | || |||||||| Sbjct 250635 TCGCTACCATGGATACCTAGCGCCACACGCAT 250666 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||||||||| | || || ||||| || ||| | || ||||| || ||| | ||| Sbjct 78663 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 78722 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || ||||| |||||||| || || || || ||||| || | | Sbjct 78723 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 78782 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||||||||||||| | || || | | | ||| | | ||||| || | ||||| Sbjct 78783 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 78842 Query 27595 GAATCCACTCTTCATCTAGTCTTG 27618 ||||||||| | || |||||||| Sbjct 78843 GAATCCACTTTGCACTTAGTCTTG 78866 >seq11 Length=646798 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 27396 TATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455 |||| | || || | | ||| || ||||| | || || ||||| || ||| | || || Sbjct 619622 TATTCCAATTTTGTACAGCTTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGT 619563 Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 ||| || ||| | ||||| ||| | ||| | || || || |||||||| || || || Sbjct 619562 TGAATCTTCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCC 619503 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 || ||||| || | | || ||||||||||||||| | || || | | | || ||| | Sbjct 619502 ACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATC 619443 Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||| || ||||||||||||||||| | ||| | |||||| Sbjct 619442 TGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTCTTG 619400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309744143040