Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001750485.1_202016-09- 30] 201 sequences; 11,553,758 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq111 159 5e-34 seq55 120 4e-22 seq53 107 3e-18 seq50 107 3e-18 >seq111 Length=83080 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 31565 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 31624 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| || ||||| || |||||||| ||| Sbjct 31625 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 31684 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||||||||| || ||||| ||||| | || |||||||| Sbjct 31685 CAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 31744 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | ||| | ||||| ||||| ||||| ||||| ||| Sbjct 31745 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGT 31792 Score = 149 bits (164), Expect = 9e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || || ||||| || |||| || ||| ||| Sbjct 31793 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 31852 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| |||| |||||| |||||||||||||| || ||||| || ||| Sbjct 31853 GACACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 31912 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| |||||||| || |||||| ||||| || || || || | Sbjct 31913 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACA-- 31970 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || ||||| ||| | ||||| ||| Sbjct 31971 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGACTGAGAGGTGGT 32020 Score = 145 bits (160), Expect = 1e-29 Identities = 181/245 (74%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 155810 TTTATGTAATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| ||||| | ||||| || || | || || ||||| || ||||| || ||||| Sbjct 31322 TTTAACTAATAGATTATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTG 31381 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 31382 GAAGTTGAATCTTCCGATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGT 31441 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || |||||||| |||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 31442 ATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACG 31501 Query 155988 TTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAG 156045 | || ||||| | | ||||||| || | || ||||| || ||||| ||||| |||| Sbjct 31502 CTGTCTGATTACA--ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAG 31559 Query 156046 GCGGT 156050 | ||| Sbjct 31560 GTGGT 31564 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 32021 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 32080 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 32081 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 32140 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||||||| || || |||||| ||||| | || || || ||| Sbjct 32141 CAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 32200 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || ||||| | || || || || || || ||| Sbjct 32201 AT-TCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGGT 32248 >seq55 Length=132018 Score = 120 bits (132), Expect = 4e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 8465 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 8524 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || || || ||||| || ||||| || || || || Sbjct 8525 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 8584 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 8585 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 8644 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 8645 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 8696 >seq53 Length=182751 Score = 107 bits (118), Expect = 3e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | || || |||||||| || || || || || ||||| ||| |||||| | |||| Sbjct 136065 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 136006 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || || ||||| || ||||| || || || || |||||||||||| Sbjct 136005 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 135946 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| |||||||| | ||||| ||||| || || || || || || ||| Sbjct 135945 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 135886 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | || | || ||||| || ||||| ||||| ||| Sbjct 135885 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGT 135847 >seq50 Length=69059 Score = 107 bits (118), Expect = 3e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || |||||||| || || || || || ||||| ||| ||||| | ||| | Sbjct 29191 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCATCTGACACCATTGACA 29250 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || ||||| || || || || |||||||||||||| | Sbjct 29251 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 29310 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013 ||| |||||||| | ||||| |||||| |||| || || | | ||||||| || Sbjct 29311 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACA--ACATCCAAAAGGA 29368 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || | ||||| || || ||||||||||| ||| Sbjct 29369 ATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGT 29405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870161171600