Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001937245.1_202017-01- 05] 40 sequences; 11,926,450 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq36 113 7e-20 seq4 107 3e-18 seq33 89.7 8e-13 >seq7 Length=436978 Score = 118 bits (130), Expect = 2e-21 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||| || ||||| ||||| || |||||||| || Sbjct 386252 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 386193 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || | ||| || || ||||||||||||||||| ||||| |||||| Sbjct 386192 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 386133 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||||| ||| ||| ||| Sbjct 386132 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 386073 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT--TTTATTAG 146285 || | ||| || |||||||| || || || || | ||| || ||||| | |||||| Sbjct 386072 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 386016 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || | || || || | || | ||| || || ||| || ||||| || || || Sbjct 386480 CCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCCGA 386422 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| |||| ||| || || |||||||||||||||||||| || ||||| Sbjct 386421 CAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGG 386362 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| ||| || ||| ||| || Sbjct 386361 AATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 386302 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || || ||||||| ||||| | ||| |||||||| Sbjct 386301 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 386254 >seq36 Length=802949 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || ||||| |||| ||||||||| || || || || || || Sbjct 554131 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 554190 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || ||||| || |||||||| ||||||||||| || || || ||| Sbjct 554191 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 554250 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||| ||| Sbjct 554251 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 554310 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || || || || ||||| ||||| || || | ||| |||||||| || Sbjct 554311 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 554360 >seq4 Length=661425 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||||||||| ||||| || || || || || || Sbjct 30779 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 30720 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 30719 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 30660 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 30659 ATACCTTCCTTGTCTTG 30643 >seq33 Length=416248 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || || || ||||| |||||||| || || || || || Sbjct 56064 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 56005 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 56004 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 55945 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 55944 ATACCTTCCTTGTCTTG 55928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526028236800