Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001937245.1_202017-01- 05] 40 sequences; 11,926,450 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq22 365 6e-96 seq3 196 6e-45 >seq22 Length=553825 Score = 365 bits (404), Expect = 6e-96 Identities = 1337/2072 (65%), Gaps = 45/2072 (2%) Strand=Plus/Plus Query 64835 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 64893 |||| || |||||||| | ||| ||||| | || || | | ||||||||| || || | Sbjct 260554 CAATAGTAAATTGAATTGCAGCAGATGCAGCTTGGGTTCTCAAATAGTACATACCGGTCT 260613 Query 64894 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 64953 | | || |||||||||||||||||||||| |||||||| | | || | Sbjct 260614 TCAATCCCTTCTTCCATCCGTAAAAATGCATACTTGTTAGTTTACCCATAGTTGGGGCAC 260673 Query 64954 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 65013 || | ||||| ||| ||| |||||| || || | | || || ||||| | Sbjct 260674 GTAAGAACAAATTCAAAGAATGAGATTGATCAATATAGACAGAACGATCGGCTGCCATGT 260733 Query 65014 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCT 65072 | ||||| |||||||||| ||||||||||| ||| || || || || | ||| |||| | Sbjct 260734 TAATGATAGTCTTTTGTGAAATTTCCCAAACAGTCTTGTATAAGTCCTTCAAT-TCTTGT 260792 Query 65073 GGAAGGTTTG-TATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCT---TGATC 65126 |||| ||||| || | |||||||| ||| | || ||||| || || | || Sbjct 260793 GGAACGTTTGGTAAGCCTTGAATGGAGCCATTTTGTG---TAATCAGATACTGTTTCATA 260849 Query 65127 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 65186 | |||| ||| | | || || | | || | | || || || || || Sbjct 260850 CCCTCATCCCAAATACCTAAATCAACCAAGTCACGCAGTAAGTAAGGGTTCACAACCTGG 260909 Query 65187 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 65246 ||||| || || || || | || | ||| ||||| || ||||| | | | ||| Sbjct 260910 AATTCACCGGATAAGACACGACGGGAGTACATATTGGAAGTGACTGGTTCGAAACATTCA 260969 Query 65247 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 65306 |||| ||||| ||||| | || |||||||| ||||| ||||||| || |||| Sbjct 260970 TTATAACCCAATATTTGGGATGTGGATGCAGTAGGCATTGGTGCCATGGTCAAGGAATTT 261029 Query 65307 CTAAGACCGTATGTTCTGATTTTATCTTTTAG--AGGT-TCCCAATTCCAAAGATCCGAC 65363 |||| ||| ||| | | || |||||||| |||| ||||||| ||| | | | Sbjct 261030 CTAATACC--ATGCT-TCATGATATCTTTTCTTAAGGTGTCCCAATCCCACATGCCGTAG 261086 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 65423 ||| ||||| ||||| | | || |||||| | Sbjct 261087 GGTTTTTGGTCCCACATATCAAACTGTAGTATACCTTGAGAAGCAGGAGATCCTTGGAAA 261146 Query 65424 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 65483 || |||||||| || ||||||| ||||||||||||| || || | | | | |||| Sbjct 261147 GTTTCGTATGGACCGTCCTTCTGAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAA 261206 Query 65484 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 65543 || ||||| ||||| | ||||||| | |||||| ||||||||| || | Sbjct 261207 ATAGTTTCAAAGATTTGGATATTTAGCAAACGGGCTTCCTCAGAATCAAATGGCAAACGT 261266 Query 65544 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603 || || || || | ||| || | ||||||||||| | | | || |||||||||||| || Sbjct 261267 AACAGCATGAAAGTGTCAGCGAGACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATA 261326 Query 65604 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 || || || |||||| || ||| || |||||| ||| || | | | || | ||| Sbjct 261327 TTGGATTTTCTCGCTTCTTCAACAGGGTAGTAATTACGATCAATGACTCTGTTTAAATTA 261386 Query 65664 C---TGACAATT-----ACTTTGACCACATCCTTC--AGTT---TGAGAAAATCAAATCG 65710 | | |||| | | ||| | || || |||| || | || || | | Sbjct 261387 CGAGTAACAACTTTAGCAATTTCATGTAATTTTTTGAAGTTGTATGTGGAAGTCTTACCA 261446 Query 65711 --CTCATCTATTACAAACA-TGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACC 65765 |||| || ||| | || | || ||||| || |||| |||||||| || Sbjct 261447 TCCTCAGAAGTTTCAATGAATGCTGGTAAGGCAACGGAAGCCAAGTTACAAACAGCAGTT 261506 Query 65766 TCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATTACTACACTTGATGGTTCC 65824 |||| | | | | |||| | || ||| ||| ||| || | |||||||| || Sbjct 261507 TCATCTGGAGCTGAGTATTCAACAATTTCACAGCATAAGTTTGATG-ACTTGATGACACC 261565 Query 65825 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 65884 ||| |||| ||||||| ||| ||||||| |||||||| |||| || ||| || ||||| Sbjct 261566 TAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTACC 261625 Query 65885 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 65944 ||||||| | |||| ||| | ||| | | ||| | | | || || || || || Sbjct 261626 AGTTTCAGTTTGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTTTGAT---AGTCTT 261682 Query 65945 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 66004 | |||| | ||||| | ||||| | || |||||||| || || || Sbjct 261683 ACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAATC 261742 Query 66005 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 66064 | || |||||| | ||| | | || | ||| || | || | || || Sbjct 261743 GCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACG 261802 Query 66065 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTC 66124 ||||| || |||||||||||||| ||||| || |||||||| | | | |||||| Sbjct 261803 CTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTC 261862 Query 66125 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAA 66184 || || ||||| ||| ||| | || | | |||||| |||||| ||||||| Sbjct 261863 TTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAG 261922 Query 66185 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 66244 ||| | ||| | | ||||| | ||| || || ||||| || | || | || ||||| Sbjct 261923 GTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTGTT 261982 Query 66245 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 66304 ||| |||| | | ||| ||||| | ||| || || ||||| || || || | || || Sbjct 261983 ATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTA 262042 Query 66305 GCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 ||| ||| |||||| ||| || |||||| || || || || |||| || || Sbjct 262043 AGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAAT 262102 Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 66424 || || ||| || || || || || || ||||| ||| || ||| ||||| || Sbjct 262103 CAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAAC 262162 Query 66425 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 66484 | ||||| |||||||| | ||| || ||||| || || || ||||| || Sbjct 262163 CAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGC 262222 Query 66485 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 66544 ||| ||||| ||||| ||| | | || ||||| || | ||| | || ||||| | Sbjct 262223 GTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATATCTCT 262282 Query 66545 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG-T 66603 || || |||| |||||| | ||| | | || || || | ||| | | |||| Sbjct 262283 ACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTCGGCCA-CTTGAC 262341 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAA 66662 ||| ||| | | || || || |||||||||||||||||||||||| |||| |||| Sbjct 262342 CGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATAACTGTACTGAA 262401 Query 66663 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC 66722 || |||| || || | ||| | ||||| | ||||||||| | || | || | || Sbjct 262402 AA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCATGACAATATTG 262460 Query 66723 ATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAAT 66782 | | | || || || |||| | || ||| | || |||||| || | | Sbjct 262461 TAGACATCATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTGACGTATCTATAA 262520 Query 66783 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 | ||| || | || | | |||| ||||| | |||| ||| |||| ||| || | ||| Sbjct 262521 AGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAATTAGAAATGGCA 262580 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 ||||| || |||| |||| ||||| ||||| Sbjct 262581 ATTCTGGCCGCTAGGGTGGCGTAATCTGGATG 262612 >seq3 Length=713315 Score = 196 bits (216), Expect = 6e-45 Identities = 588/899 (65%), Gaps = 13/899 (1%) Strand=Plus/Minus Query 35847 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 35906 |||| |||||||| || |||||||| ||| || | |||||||| || ||||| | Sbjct 390082 CTTG-GACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCT 390024 Query 35907 TACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttt 35966 |||| | || || || ||||||||||||||||| || || || || || ||| | Sbjct 390023 TACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCT 389964 Query 35967 tAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTT 36026 | || || | | || ||| || ||||| || || | ||| ||||| | | Sbjct 389963 TGTTACCGAAAGCGACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGT 389904 Query 36027 CACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT-TCTT-GTTCAAT 36084 || ||||| |||| | |||||| | || | ||||| | |||| ||||||| Sbjct 389903 CAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAAT 389846 Query 36085 AGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATG 36144 || || || || | ||| | || | || ||| | | ||||| Sbjct 389845 TTCCACAGCCTCGGTGACAATTTTTTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAATG 389786 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 |||| ||| ||||| || ||| ||| | ||| |||||||||| || |||||||| Sbjct 389785 GGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTT 389726 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 |||||| || | |||||||| | || | |||||| | ||| || ||||| ||||| || Sbjct 389725 GGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGA 389666 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---- 36320 || || || || | ||||| | | |||||||||| ||||| || ||| ||| Sbjct 389665 ACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGG 389607 Query 36321 CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 36380 || || ||| || ||||| || |||||| |||||||||| | || || | Sbjct 389606 CGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGG 389547 Query 36381 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 36440 | | || ||||| || | | | |||| ||| || || | || ||||| |||| Sbjct 389546 TGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCGATCA 389487 Query 36441 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 36500 | | || |||| || ||||| |||||||| ||||| || |||||||||| Sbjct 389486 ACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCT 389427 Query 36501 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 36560 | ||||| | ||| || ||||| || | || ||| | || |||||||| || || | Sbjct 389426 TTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATAC 389367 Query 36561 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGT--G 36617 ||||| || || ||||| || | || || ||| || | ||||| | || Sbjct 389366 CGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTCA 389307 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 || || ||||| |||| |||||| ||||| | ||| | |||||| | ||||| || | Sbjct 389306 TTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAG 389247 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 36736 | || || || || || | |||||| ||||| || | || || |||| |||| Sbjct 389246 AAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACA 389188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172470913600